Variant information

Chr04:16132239 - 16134271

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 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
16132262CT291118.771.00DOWNSTREAM(|617||None|Vigan.04G134000.01), UTR_5_PRIME(|404||None|Vigan.04G133900.01)Vigna nepalensis
16132347GA351526.771.00DOWNSTREAM(|532||None|Vigan.04G134000.01), UTR_5_PRIME(|319||None|Vigan.04G133900.01)Vigna nepalensis
16132424AT421605.771.00DOWNSTREAM(|455||None|Vigan.04G134000.01), START_GAINED(|||None|Vigan.04G133900.01), UTR_5_PRIME(|242||None|Vigan.04G133900.01)Vigna nepalensis
16132540AG572304.771.00DOWNSTREAM(|339||None|Vigan.04G134000.01), UTR_5_PRIME(|126||None|Vigan.04G133900.01)Vigna nepalensis
16132701TC531918.771.00DOWNSTREAM(|178||None|Vigan.04G134000.01), SYNONYMOUS_CODING(SILENT|gaT/gaC|D12|None|Vigan.04G133900.01)Vigna nepalensis
16132835AC271187.771.00DOWNSTREAM(|44||None|Vigan.04G134000.01), INTRON(|||None|Vigan.04G133900.01)Vigna nepalensis
16132837AC271232.771.00DOWNSTREAM(|42||None|Vigan.04G134000.01), INTRON(|||None|Vigan.04G133900.01)Vigna nepalensis
16132839AC281232.771.00DOWNSTREAM(|40||None|Vigan.04G134000.01), INTRON(|||None|Vigan.04G133900.01)Vigna nepalensis
16132841AC271232.771.00DOWNSTREAM(|38||None|Vigan.04G134000.01), INTRON(|||None|Vigan.04G133900.01)Vigna nepalensis
16132957TA441736.771.00INTRON(|||None|Vigan.04G133900.01), UTR_3_PRIME(|917||None|Vigan.04G134000.01)Vigna nepalensis
16133082GT351413.771.00SYNONYMOUS_CODING(SILENT|acG/acT|T74|None|Vigan.04G133900.01), UTR_3_PRIME(|792||None|Vigan.04G134000.01)Vigna nepalensis
16133378AG622483.771.00UTR_3_PRIME(|179||None|Vigan.04G133900.01), UTR_3_PRIME(|496||None|Vigan.04G134000.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
16132349CCAA331553.731.00DOWNSTREAM(|529||None|Vigan.04G134000.01), UTR_5_PRIME(|316||None|Vigan.04G133900.01)Vigna nepalensis
16132885CAC281063.731.00INTRON(|||None|Vigan.04G133900.01), UTR_3_PRIME(|988||None|Vigan.04G134000.01)Vigna nepalensis
16133240AAT632385.731.00UTR_3_PRIME(|42||None|Vigan.04G133900.01), UTR_3_PRIME(|633||None|Vigan.04G134000.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
16132817(TA)30(TA)22261178.731.00DOWNSTREAM(|61||None|Vigan.04G134000.01), INTRON(|||None|Vigan.04G133900.01)Vigna nepalensis