VIGGS:Variant information

Chr04:10202188 - 10208076

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SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
10202560	G	C	44	1782.77	1.00	SYNONYMOUS_CODING(SILENT\|tcG/tcC\|S10\|None\|Vigan.04G100000.01)	Vigna nepalensis
10202877	T	C	38	1476.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|cTg/cCg\|L116P\|None\|Vigan.04G100000.01)	Vigna nepalensis
10202963	A	G	41	1581.77	1.00	INTRON(\|\|\|None\|Vigan.04G100000.01)	Vigna nepalensis
10203309	A	G	70	2633.77	1.00	INTRON(\|\|\|None\|Vigan.04G100000.01)	Vigna nepalensis
10203432	G	C	59	2253.77	1.00	INTRON(\|\|\|None\|Vigan.04G100000.01)	Vigna nepalensis
10203559	C	T	59	2677.77	1.00	INTRON(\|\|\|None\|Vigan.04G100000.01)	Vigna nepalensis
10203571	C	G	60	2673.77	1.00	INTRON(\|\|\|None\|Vigan.04G100000.01)	Vigna nepalensis
10203780	C	A	50	1957.77	1.00	INTRON(\|\|\|None\|Vigan.04G100000.01)	Vigna nepalensis
10203866	T	C	60	2398.77	1.00	INTRON(\|\|\|None\|Vigan.04G100000.01)	Vigna nepalensis
10204236	C	T	61	2763.77	1.00	INTRON(\|\|\|None\|Vigan.04G100000.01)	Vigna nepalensis
10204241	A	G	60	2702.77	1.00	INTRON(\|\|\|None\|Vigan.04G100000.01)	Vigna nepalensis
10204791	T	G	46	1763.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|Tcc/Gcc\|S204A\|None\|Vigan.04G100000.01)	Vigna nepalensis
10205139	T	C	45	1840.77	1.00	INTRON(\|\|\|None\|Vigan.04G100000.01)	Vigna nepalensis
10205259	C	G	46	1870.77	1.00	SYNONYMOUS_CODING(SILENT\|ggC/ggG\|G302\|None\|Vigan.04G100000.01)	Vigna nepalensis
10205515	C	A	60	2751.77	1.00	INTRON(\|\|\|None\|Vigan.04G100000.01)	Vigna nepalensis
10205522	G	T	65	2887.77	1.00	INTRON(\|\|\|None\|Vigan.04G100000.01)	Vigna nepalensis
10206049	T	C	46	2031.77	1.00	INTRON(\|\|\|None\|Vigan.04G100000.01)	Vigna nepalensis
10206064	C	T	51	2235.77	1.00	INTRON(\|\|\|None\|Vigan.04G100000.01)	Vigna nepalensis
10206187	T	A	70	3083.77	1.00	INTRON(\|\|\|None\|Vigan.04G100000.01)	Vigna nepalensis
10206479	G	A	63	2565.77	1.00	INTRON(\|\|\|None\|Vigan.04G100000.01)	Vigna nepalensis
10207389	C	A	55	2367.77	1.00	INTRON(\|\|\|None\|Vigan.04G100000.01)	Vigna nepalensis
10207412	G	T	61	2761.77	1.00	INTRON(\|\|\|None\|Vigan.04G100000.01)	Vigna nepalensis
10207413	T	G	60	2716.77	1.00	INTRON(\|\|\|None\|Vigan.04G100000.01)	Vigna nepalensis
10207765	G	A	61	2350.77	1.00	UTR_3_PRIME(\|1\|\|None\|Vigan.04G100000.01)	Vigna nepalensis
10207808	G	T	59	2380.77	1.00	UTR_3_PRIME(\|44\|\|None\|Vigan.04G100000.01)	Vigna nepalensis
10208007	G	T	57	2295.77	1.00	UTR_3_PRIME(\|243\|\|None\|Vigan.04G100000.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
10202190	AAAACT	A	63	2830.73	1.00	UTR_5_PRIME(\|336\|\|None\|Vigan.04G100000.01)	Vigna nepalensis
10202268	CCTTCTCACT	C	57	2489.73	1.00	UTR_5_PRIME(\|254\|\|None\|Vigan.04G100000.01)	Vigna nepalensis
10204026	C	CA	45	1596.73	1.00	INTRON(\|\|\|None\|Vigan.04G100000.01)	Vigna nepalensis
10206160	ATTATTCGCATGTATTCAGTGG	A	62	2875.73	1.00	INTRON(\|\|\|None\|Vigan.04G100000.01)	Vigna nepalensis