VIGGS:Variant information

Chr03:4583099 - 4586693

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Species
- Vigna nepalensis
Effect
- INTRON
- UTR_3_PRIME
- UTR_5_PRIME

SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
4583453	G	C	53	2356.77	1.00	UTR_3_PRIME(\|342\|\|None\|Vigan.03G048100.01)	Vigna nepalensis
4583454	A	C	53	2356.77	1.00	UTR_3_PRIME(\|341\|\|None\|Vigan.03G048100.01)	Vigna nepalensis
4583498	T	C	49	1976.77	1.00	UTR_3_PRIME(\|297\|\|None\|Vigan.03G048100.01)	Vigna nepalensis
4583551	T	A	47	1845.77	1.00	UTR_3_PRIME(\|244\|\|None\|Vigan.03G048100.01)	Vigna nepalensis
4583570	T	C	48	1904.77	1.00	UTR_3_PRIME(\|225\|\|None\|Vigan.03G048100.01)	Vigna nepalensis
4583915	G	A	57	2565.77	1.00	INTRON(\|\|\|None\|Vigan.03G048100.01)	Vigna nepalensis
4583917	A	T	58	2565.77	1.00	INTRON(\|\|\|None\|Vigan.03G048100.01)	Vigna nepalensis
4583969	T	G	63	2528.77	1.00	INTRON(\|\|\|None\|Vigan.03G048100.01)	Vigna nepalensis
4584091	T	C	58	2308.77	1.00	INTRON(\|\|\|None\|Vigan.03G048100.01)	Vigna nepalensis
4584165	A	T	54	2202.77	1.00	INTRON(\|\|\|None\|Vigan.03G048100.01)	Vigna nepalensis
4584224	G	C	51	2033.77	1.00	INTRON(\|\|\|None\|Vigan.03G048100.01)	Vigna nepalensis
4584265	C	G	57	2259.77	1.00	INTRON(\|\|\|None\|Vigan.03G048100.01)	Vigna nepalensis
4584412	A	T	56	2036.77	1.00	INTRON(\|\|\|None\|Vigan.03G048100.01)	Vigna nepalensis
4584607	C	T	47	1835.77	1.00	INTRON(\|\|\|None\|Vigan.03G048100.01)	Vigna nepalensis
4584660	T	C	44	1690.77	1.00	INTRON(\|\|\|None\|Vigan.03G048100.01)	Vigna nepalensis
4584822	T	C	51	1953.77	1.00	INTRON(\|\|\|None\|Vigan.03G048100.01)	Vigna nepalensis
4584837	C	T	49	1907.77	1.00	INTRON(\|\|\|None\|Vigan.03G048100.01)	Vigna nepalensis
4585157	T	C	39	1493.77	1.00	INTRON(\|\|\|None\|Vigan.03G048100.01)	Vigna nepalensis
4585779	G	A	44	1745.77	1.00	INTRON(\|\|\|None\|Vigan.03G048100.01)	Vigna nepalensis
4585790	C	A	44	1834.77	1.00	INTRON(\|\|\|None\|Vigan.03G048100.01)	Vigna nepalensis
4585855	T	C	58	2456.77	1.00	INTRON(\|\|\|None\|Vigan.03G048100.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
4583356	C	CAAG	61	2746.73	1.00	UTR_3_PRIME(\|438\|\|None\|Vigan.03G048100.01)	Vigna nepalensis
4583729	AG	A	57	2184.73	1.00	UTR_3_PRIME(\|65\|\|None\|Vigan.03G048100.01)	Vigna nepalensis
4584569	T	TAAG	47	2099.73	1.00	INTRON(\|\|\|None\|Vigan.03G048100.01)	Vigna nepalensis
4585719	GTAAA	G	48	2096.73	1.00	INTRON(\|\|\|None\|Vigan.03G048100.01)	Vigna nepalensis
4586582	G	GA	40	1410.73	1.00	UTR_5_PRIME(\|52\|\|None\|Vigan.03G048100.01)	Vigna nepalensis