Variant information

Chr03:41879523 - 41881741

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
41880358CT81354.770.17DOWNSTREAM(|1535||None|Vigan.03G279600.01), UTR_5_PRIME(|77||None|Vigan.03G279500.01)Vigna nepalensis
41880359AG80396.770.17DOWNSTREAM(|1534||None|Vigan.03G279600.01), UTR_5_PRIME(|76||None|Vigan.03G279500.01)Vigna nepalensis
41880365CT79444.770.20DOWNSTREAM(|1528||None|Vigan.03G279600.01), UTR_5_PRIME(|70||None|Vigan.03G279500.01)Vigna nepalensis
41880369GT81480.770.20DOWNSTREAM(|1524||None|Vigan.03G279600.01), UTR_5_PRIME(|66||None|Vigan.03G279500.01)Vigna nepalensis
41880374CT82590.770.22DOWNSTREAM(|1519||None|Vigan.03G279600.01), UTR_5_PRIME(|61||None|Vigan.03G279500.01)Vigna nepalensis
41880380GC87635.770.24DOWNSTREAM(|1513||None|Vigan.03G279600.01), UTR_5_PRIME(|55||None|Vigan.03G279500.01)Vigna nepalensis
41880395GC86631.770.27DOWNSTREAM(|1498||None|Vigan.03G279600.01), START_GAINED(|||None|Vigan.03G279500.01), UTR_5_PRIME(|40||None|Vigan.03G279500.01)Vigna nepalensis
41880417TC961068.770.32DOWNSTREAM(|1476||None|Vigan.03G279600.01), UTR_5_PRIME(|18||None|Vigan.03G279500.01)Vigna nepalensis
41880418GT961068.770.32DOWNSTREAM(|1475||None|Vigan.03G279600.01), UTR_5_PRIME(|17||None|Vigan.03G279500.01)Vigna nepalensis
41880428GA951052.770.31DOWNSTREAM(|1465||None|Vigan.03G279600.01), UTR_5_PRIME(|7||None|Vigan.03G279500.01)Vigna nepalensis
41880448CA91979.770.32DOWNSTREAM(|1445||None|Vigan.03G279600.01), NON_SYNONYMOUS_CODING(MISSENSE|tCt/tAt|S5Y|None|Vigan.03G279500.01)Vigna nepalensis
41880457GA82958.770.32DOWNSTREAM(|1436||None|Vigan.03G279600.01), NON_SYNONYMOUS_CODING(MISSENSE|gGa/gAa|G8E|None|Vigan.03G279500.01)Vigna nepalensis
41880466CA75768.770.31DOWNSTREAM(|1427||None|Vigan.03G279600.01), NON_SYNONYMOUS_CODING(MISSENSE|tCc/tAc|S11Y|None|Vigan.03G279500.01)Vigna nepalensis
41880490GA69522.770.25DOWNSTREAM(|1403||None|Vigan.03G279600.01), NON_SYNONYMOUS_CODING(MISSENSE|gGa/gAa|G19E|None|Vigan.03G279500.01)Vigna nepalensis
41880519CT55130.770.15DOWNSTREAM(|1374||None|Vigan.03G279600.01), NON_SYNONYMOUS_CODING(MISSENSE|Cgc/Tgc|R29C|None|Vigan.03G279500.01)Vigna nepalensis
41880540CT521916.780.92DOWNSTREAM(|1353||None|Vigan.03G279600.01), NON_SYNONYMOUS_CODING(MISSENSE|Cat/Tat|H36Y|None|Vigan.03G279500.01)Vigna nepalensis
41880547CA482223.771.00DOWNSTREAM(|1346||None|Vigan.03G279600.01), NON_SYNONYMOUS_CODING(MISSENSE|cCg/cAg|P38Q|None|Vigan.03G279500.01)Vigna nepalensis
41880660GA542133.771.00DOWNSTREAM(|1233||None|Vigan.03G279600.01), INTRON(|||None|Vigan.03G279500.01)Vigna nepalensis
41880735GA512016.771.00DOWNSTREAM(|1158||None|Vigan.03G279600.01), INTRON(|||None|Vigan.03G279500.01)Vigna nepalensis
41881027GT592419.771.00DOWNSTREAM(|866||None|Vigan.03G279600.01), SYNONYMOUS_CODING(SILENT|acG/acT|T152|None|Vigan.03G279500.01)Vigna nepalensis
41881140GA612336.771.00DOWNSTREAM(|753||None|Vigan.03G279600.01), INTRON(|||None|Vigan.03G279500.01)Vigna nepalensis
41881695TA662666.771.00DOWNSTREAM(|198||None|Vigan.03G279600.01), UTR_3_PRIME(|278||None|Vigan.03G279500.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
41879541TTCT22814.731.00DOWNSTREAM(|2351||None|Vigan.03G279600.01), UTR_5_PRIME(|892||None|Vigan.03G279500.01)Vigna nepalensis
41879684CCTTT261164.731.00DOWNSTREAM(|2208||None|Vigan.03G279600.01), UTR_5_PRIME(|750||None|Vigan.03G279500.01)Vigna nepalensis
41880376CCAA86626.730.23DOWNSTREAM(|1516||None|Vigan.03G279600.01), UTR_5_PRIME(|58||None|Vigan.03G279500.01)Vigna nepalensis
41880407ACA90900.730.30DOWNSTREAM(|1485||None|Vigan.03G279600.01), UTR_5_PRIME(|27||None|Vigan.03G279500.01)Vigna nepalensis
41880468GTTG74768.730.31DOWNSTREAM(|1424||None|Vigan.03G279600.01), FRAME_SHIFT(|gtt/|V12|None|Vigan.03G279500.01)Vigna nepalensis
41880472TGGCT73768.730.30CODON_CHANGE_PLUS_CODON_DELETION(|gtggct/gtt|VA13V|None|Vigan.03G279500.01), DOWNSTREAM(|1420||None|Vigan.03G279600.01)Vigna nepalensis
41880488AGA69513.730.25DOWNSTREAM(|1404||None|Vigan.03G279600.01), FRAME_SHIFT(|gga/|G19|None|Vigan.03G279500.01)Vigna nepalensis