Variant information

Chr03:1243743 - 1247419

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
1243745AG471762.771.00START_GAINED(|||None|Vigan.03G015900.01), UTR_5_PRIME(|154||None|Vigan.03G015900.01)Vigna nepalensis
1243997TC401549.771.00SYNONYMOUS_CODING(SILENT|cgT/cgC|R33|None|Vigan.03G015900.01)Vigna nepalensis
1244040GC532361.771.00INTRON(|||None|Vigan.03G015900.01)Vigna nepalensis
1244163CT712753.771.00INTRON(|||None|Vigan.03G015900.01)Vigna nepalensis
1244330GA693063.771.00INTRON(|||None|Vigan.03G015900.01)Vigna nepalensis
1244331CT683063.771.00INTRON(|||None|Vigan.03G015900.01)Vigna nepalensis
1244358TC703063.771.00INTRON(|||None|Vigan.03G015900.01)Vigna nepalensis
1244368GA693035.771.00INTRON(|||None|Vigan.03G015900.01)Vigna nepalensis
1244479AG542569.771.00INTRON(|||None|Vigan.03G015900.01)Vigna nepalensis
1244480CT552654.771.00INTRON(|||None|Vigan.03G015900.01)Vigna nepalensis
1244504TA522271.771.00INTRON(|||None|Vigan.03G015900.01)Vigna nepalensis
1244557CT562273.771.00INTRON(|||None|Vigan.03G015900.01)Vigna nepalensis
1244629TG592357.771.00INTRON(|||None|Vigan.03G015900.01)Vigna nepalensis
1244692CA461824.771.00INTRON(|||None|Vigan.03G015900.01)Vigna nepalensis
1244742TG502371.771.00INTRON(|||None|Vigan.03G015900.01)Vigna nepalensis
1244746GT542409.771.00INTRON(|||None|Vigan.03G015900.01)Vigna nepalensis
1244875GC693100.771.00INTRON(|||None|Vigan.03G015900.01)Vigna nepalensis
1244879GT663085.771.00INTRON(|||None|Vigan.03G015900.01)Vigna nepalensis
1244883GC672978.771.00INTRON(|||None|Vigan.03G015900.01)Vigna nepalensis
1244910AG622830.771.00INTRON(|||None|Vigan.03G015900.01)Vigna nepalensis
1244915GA653104.771.00INTRON(|||None|Vigan.03G015900.01)Vigna nepalensis
1244930GA703270.771.00INTRON(|||None|Vigan.03G015900.01)Vigna nepalensis
1244942GA652855.771.00INTRON(|||None|Vigan.03G015900.01)Vigna nepalensis
1244999GA672575.771.00INTRON(|||None|Vigan.03G015900.01)Vigna nepalensis
1245138CG401578.771.00SYNONYMOUS_CODING(SILENT|acC/acG|T75|None|Vigan.03G015900.01)Vigna nepalensis
1245192CG351362.771.00INTRON(|||None|Vigan.03G015900.01)Vigna nepalensis
1245280CT44207.770.27SYNONYMOUS_CODING(SILENT|aaC/aaT|N93|None|Vigan.03G015900.01)Vigna nepalensis
1245403AG331231.771.00SYNONYMOUS_CODING(SILENT|aaA/aaG|K134|None|Vigan.03G015900.01)Vigna nepalensis
1245694AG522005.771.00SYNONYMOUS_CODING(SILENT|gaA/gaG|E231|None|Vigan.03G015900.01)Vigna nepalensis
1245796AG9301.781.00SYNONYMOUS_CODING(SILENT|aaA/aaG|K265|None|Vigan.03G015900.01)Vigna nepalensis
1245895GA16417.770.88SYNONYMOUS_CODING(SILENT|aaG/aaA|K298|None|Vigan.03G015900.01)Vigna nepalensis
1246234CG6240.841.00SYNONYMOUS_CODING(SILENT|gcC/gcG|A411|None|Vigan.03G015900.01)Vigna nepalensis
1246258TC7311.781.00SYNONYMOUS_CODING(SILENT|ggT/ggC|G419|None|Vigan.03G015900.01)Vigna nepalensis
1246301CT5221.841.00SYNONYMOUS_CODING(SILENT|Ctg/Ttg|L434|None|Vigan.03G015900.01)Vigna nepalensis
1246315AT6273.81.00SYNONYMOUS_CODING(SILENT|tcA/tcT|S438|None|Vigan.03G015900.01)Vigna nepalensis
1246333GA9360.781.00SYNONYMOUS_CODING(SILENT|gaG/gaA|E444|None|Vigan.03G015900.01)Vigna nepalensis
1246380GA11397.771.00NON_SYNONYMOUS_CODING(MISSENSE|aGt/aAt|S460N|None|Vigan.03G015900.01)Vigna nepalensis
1246420AG17721.771.00SYNONYMOUS_CODING(SILENT|gtA/gtG|V473|None|Vigan.03G015900.01)Vigna nepalensis
1246426TC17720.771.00SYNONYMOUS_CODING(SILENT|aaT/aaC|N475|None|Vigan.03G015900.01)Vigna nepalensis
1246450AG27952.771.00SYNONYMOUS_CODING(SILENT|aaA/aaG|K483|None|Vigan.03G015900.01)Vigna nepalensis
1246486TC391450.771.00SYNONYMOUS_CODING(SILENT|gcT/gcC|A495|None|Vigan.03G015900.01)Vigna nepalensis
1246582CT592188.771.00SYNONYMOUS_CODING(SILENT|gaC/gaT|D527|None|Vigan.03G015900.01)Vigna nepalensis
1246612GA421838.771.00SYNONYMOUS_CODING(SILENT|gaG/gaA|E537|None|Vigan.03G015900.01)Vigna nepalensis
1246621CT391685.771.00SYNONYMOUS_CODING(SILENT|gaC/gaT|D540|None|Vigan.03G015900.01)Vigna nepalensis
1246648GT21789.771.00SYNONYMOUS_CODING(SILENT|gtG/gtT|V549|None|Vigan.03G015900.01)Vigna nepalensis
1246717TC18646.771.00SYNONYMOUS_CODING(SILENT|acT/acC|T572|None|Vigan.03G015900.01)Vigna nepalensis
1246783CT16607.771.00SYNONYMOUS_CODING(SILENT|agC/agT|S594|None|Vigan.03G015900.01)Vigna nepalensis
1246855GA12545.771.00SYNONYMOUS_CODING(SILENT|agG/agA|R618|None|Vigan.03G015900.01)Vigna nepalensis
1246870CT12488.771.00SYNONYMOUS_CODING(SILENT|gcC/gcT|A623|None|Vigan.03G015900.01)Vigna nepalensis
1246939AC25961.771.00SYNONYMOUS_CODING(SILENT|ggA/ggC|G646|None|Vigan.03G015900.01)Vigna nepalensis
1247011CT311312.771.00SYNONYMOUS_CODING(SILENT|gaC/gaT|D670|None|Vigan.03G015900.01)Vigna nepalensis
1247035TC301241.771.00SYNONYMOUS_CODING(SILENT|gcT/gcC|A678|None|Vigan.03G015900.01)Vigna nepalensis
1247108TC341588.771.00UTR_3_PRIME(|7||None|Vigan.03G015900.01)Vigna nepalensis
1247189GC602489.771.00UTR_3_PRIME(|88||None|Vigan.03G015900.01)Vigna nepalensis
1247257CG482194.771.00UTR_3_PRIME(|156||None|Vigan.03G015900.01)Vigna nepalensis
1247271GT552514.771.00UTR_3_PRIME(|170||None|Vigan.03G015900.01)Vigna nepalensis
1247299TC512227.771.00UTR_3_PRIME(|198||None|Vigan.03G015900.01)Vigna nepalensis
1247353GT391996.771.00UTR_3_PRIME(|252||None|Vigan.03G015900.01)Vigna nepalensis
1247358GT411996.771.00UTR_3_PRIME(|257||None|Vigan.03G015900.01)Vigna nepalensis
1247359TA411996.771.00UTR_3_PRIME(|258||None|Vigan.03G015900.01)Vigna nepalensis
1247372GA452041.771.00UTR_3_PRIME(|271||None|Vigan.03G015900.01)Vigna nepalensis
1247396AG512356.771.00UTR_3_PRIME(|295||None|Vigan.03G015900.01)Vigna nepalensis
1247416GT612829.771.00UTR_3_PRIME(|315||None|Vigan.03G015900.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
1243821TGT482113.731.00UTR_5_PRIME(|77||None|Vigan.03G015900.01)Vigna nepalensis
1243823CTC482113.731.00UTR_5_PRIME(|75||None|Vigan.03G015900.01)Vigna nepalensis
1244043GTG532387.731.00INTRON(|||None|Vigan.03G015900.01)Vigna nepalensis
1244388GTG722406.731.00INTRON(|||None|Vigan.03G015900.01)Vigna nepalensis
1244773GGTT441624.731.00INTRON(|||None|Vigan.03G015900.01)Vigna nepalensis
1245220CTC21646.731.00INTRON(|||None|Vigan.03G015900.01)Vigna nepalensis
1247113TTAT391723.731.00UTR_3_PRIME(|13||None|Vigan.03G015900.01)Vigna nepalensis
1247275AGTTA532376.731.00UTR_3_PRIME(|175||None|Vigan.03G015900.01)Vigna nepalensis
1247330AAGTTTTTATG442345.731.00UTR_3_PRIME(|230||None|Vigan.03G015900.01)Vigna nepalensis
1247331CCTACAAAAA452390.731.00UTR_3_PRIME(|231||None|Vigan.03G015900.01)Vigna nepalensis
1247333TTTGAATTAATAAAA472617.731.00UTR_3_PRIME(|233||None|Vigan.03G015900.01)Vigna nepalensis
1247412TGT572797.731.00UTR_3_PRIME(|312||None|Vigan.03G015900.01)Vigna nepalensis