VIGGS:Variant information

Chr02:9701821 - 9708021

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
9702123	G	C	49	2164.77	1.00	UTR_5_PRIME(\|130\|\|None\|Vigan.02G115400.01)	Vigna nepalensis
9702172	C	T	63	2461.77	1.00	UTR_5_PRIME(\|81\|\|None\|Vigan.02G115400.01)	Vigna nepalensis
9702757	A	G	57	2217.77	1.00	INTRON(\|\|\|None\|Vigan.02G115400.01)	Vigna nepalensis
9703014	A	G	59	2398.77	1.00	INTRON(\|\|\|None\|Vigan.02G115400.01)	Vigna nepalensis
9703246	G	A	46	1806.77	1.00	INTRON(\|\|\|None\|Vigan.02G115400.01)	Vigna nepalensis
9703291	G	C	46	1847.77	1.00	INTRON(\|\|\|None\|Vigan.02G115400.01)	Vigna nepalensis
9703641	C	T	66	2714.77	1.00	INTRON(\|\|\|None\|Vigan.02G115400.01)	Vigna nepalensis
9705073	G	A	42	1634.77	1.00	DOWNSTREAM(\|4009\|\|None\|Vigan.02G115500.01), INTRON(\|\|\|None\|Vigan.02G115400.01)	Vigna nepalensis
9705241	C	T	54	2210.77	1.00	DOWNSTREAM(\|3841\|\|None\|Vigan.02G115500.01), INTRON(\|\|\|None\|Vigan.02G115400.01)	Vigna nepalensis
9705565	G	A	47	1923.77	1.00	DOWNSTREAM(\|3517\|\|None\|Vigan.02G115500.01), INTRON(\|\|\|None\|Vigan.02G115400.01)	Vigna nepalensis
9705805	G	C	67	2754.77	1.00	DOWNSTREAM(\|3277\|\|None\|Vigan.02G115500.01), INTRON(\|\|\|None\|Vigan.02G115400.01)	Vigna nepalensis
9706112	T	C	66	2606.77	1.00	DOWNSTREAM(\|2970\|\|None\|Vigan.02G115500.01), INTRON(\|\|\|None\|Vigan.02G115400.01)	Vigna nepalensis
9706424	G	A	58	2323.77	1.00	DOWNSTREAM(\|2658\|\|None\|Vigan.02G115500.01), INTRON(\|\|\|None\|Vigan.02G115400.01)	Vigna nepalensis

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
9702114	C	CCTCT	44	2000.73	1.00	UTR_5_PRIME(\|138\|\|None\|Vigan.02G115400.01)	Vigna nepalensis
9702552	CATATACAT	C	35	1585.73	1.00	INTRON(\|\|\|None\|Vigan.02G115400.01)	Vigna nepalensis
9702969	G	GATGCA	61	2817.73	1.00	INTRON(\|\|\|None\|Vigan.02G115400.01)	Vigna nepalensis
9704265	ATGTGTTCTTTTATATTTATAATTTTTT	A	43	1866.73	1.00	DOWNSTREAM(\|4816\|\|None\|Vigan.02G115500.01), INTRON(\|\|\|None\|Vigan.02G115400.01)	Vigna nepalensis
9704905	G	GTTGTGTCAAACTTC	46	2268.73	1.00	DOWNSTREAM(\|4176\|\|None\|Vigan.02G115500.01), INTRON(\|\|\|None\|Vigan.02G115400.01)	Vigna nepalensis
9706353	A	ATTCAAATTCAAAACAT	54	2635.73	1.00	DOWNSTREAM(\|2728\|\|None\|Vigan.02G115500.01), INTRON(\|\|\|None\|Vigan.02G115400.01)	Vigna nepalensis
9707514	AG	A	62	2065.73	1.00	DOWNSTREAM(\|1567\|\|None\|Vigan.02G115500.01), UTR_3_PRIME(\|143\|\|None\|Vigan.02G115400.01)	Vigna nepalensis

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
9702579	(TA)24	(TA)14	42	1803.73	1.00	INTRON(\|\|\|None\|Vigan.02G115400.01)	Vigna nepalensis