Variant information

Chr02:9291158 - 9296510

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 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
9291997AG592418.771.00UPSTREAM(|2712||None|Vigan.02G111200.01), UTR_3_PRIME(|200||None|Vigan.02G111300.01), UTR_5_PRIME(|2294||None|Vigan.02G111400.01)Vigna nepalensis
9292062AT401634.771.00UPSTREAM(|2777||None|Vigan.02G111200.01), UTR_3_PRIME(|135||None|Vigan.02G111300.01), UTR_5_PRIME(|2229||None|Vigan.02G111400.01)Vigna nepalensis
9293761AG492000.771.00UPSTREAM(|4212||None|Vigan.02G111500.01), UPSTREAM(|4476||None|Vigan.02G111200.01), UTR_5_PRIME(|530||None|Vigan.02G111400.01), UTR_5_PRIME(|5||None|Vigan.02G111300.01)Vigna nepalensis
9293812GA491895.771.00START_GAINED(|||None|Vigan.02G111300.01), UPSTREAM(|4161||None|Vigan.02G111500.01), UPSTREAM(|4527||None|Vigan.02G111200.01), UTR_5_PRIME(|479||None|Vigan.02G111400.01), UTR_5_PRIME(|56||None|Vigan.02G111300.01)Vigna nepalensis
9293842CT421732.771.00UPSTREAM(|4131||None|Vigan.02G111500.01), UPSTREAM(|4557||None|Vigan.02G111200.01), UTR_5_PRIME(|449||None|Vigan.02G111400.01), UTR_5_PRIME(|86||None|Vigan.02G111300.01)Vigna nepalensis
9293884TC542104.771.00UPSTREAM(|4089||None|Vigan.02G111500.01), UPSTREAM(|4599||None|Vigan.02G111200.01), UTR_5_PRIME(|128||None|Vigan.02G111300.01), UTR_5_PRIME(|407||None|Vigan.02G111400.01)Vigna nepalensis
9293895AG572176.771.00START_GAINED(|||None|Vigan.02G111400.01), UPSTREAM(|11||None|Vigan.02G111300.01), UPSTREAM(|4078||None|Vigan.02G111500.01), UPSTREAM(|4610||None|Vigan.02G111200.01), UTR_5_PRIME(|396||None|Vigan.02G111400.01)Vigna nepalensis
9293907TC552170.771.00UPSTREAM(|23||None|Vigan.02G111300.01), UPSTREAM(|4066||None|Vigan.02G111500.01), UPSTREAM(|4622||None|Vigan.02G111200.01), UTR_5_PRIME(|384||None|Vigan.02G111400.01)Vigna nepalensis
9293945AT642604.771.00UPSTREAM(|4028||None|Vigan.02G111500.01), UPSTREAM(|4660||None|Vigan.02G111200.01), UPSTREAM(|61||None|Vigan.02G111300.01), UTR_5_PRIME(|346||None|Vigan.02G111400.01)Vigna nepalensis
9293973GA582656.771.00UPSTREAM(|4000||None|Vigan.02G111500.01), UPSTREAM(|4688||None|Vigan.02G111200.01), UPSTREAM(|89||None|Vigan.02G111300.01), UTR_5_PRIME(|318||None|Vigan.02G111400.01)Vigna nepalensis
9293974TA582693.771.00START_GAINED(|||None|Vigan.02G111400.01), UPSTREAM(|3999||None|Vigan.02G111500.01), UPSTREAM(|4689||None|Vigan.02G111200.01), UPSTREAM(|90||None|Vigan.02G111300.01), UTR_5_PRIME(|317||None|Vigan.02G111400.01)Vigna nepalensis
9293982AT512344.771.00UPSTREAM(|3991||None|Vigan.02G111500.01), UPSTREAM(|4697||None|Vigan.02G111200.01), UPSTREAM(|98||None|Vigan.02G111300.01), UTR_5_PRIME(|309||None|Vigan.02G111400.01)Vigna nepalensis
9294001CA512027.771.00UPSTREAM(|117||None|Vigan.02G111300.01), UPSTREAM(|3972||None|Vigan.02G111500.01), UPSTREAM(|4716||None|Vigan.02G111200.01), UTR_5_PRIME(|290||None|Vigan.02G111400.01)Vigna nepalensis
9294539AG321236.771.00DOWNSTREAM(|4745||None|Vigan.02G111600.01), SYNONYMOUS_CODING(SILENT|gaA/gaG|E83|None|Vigan.02G111400.01), UPSTREAM(|3434||None|Vigan.02G111500.01), UPSTREAM(|655||None|Vigan.02G111300.01)Vigna nepalensis
9294659CG391540.771.00DOWNSTREAM(|4625||None|Vigan.02G111600.01), SYNONYMOUS_CODING(SILENT|tcC/tcG|S123|None|Vigan.02G111400.01), UPSTREAM(|3314||None|Vigan.02G111500.01), UPSTREAM(|775||None|Vigan.02G111300.01)Vigna nepalensis
9294964AG532174.771.00DOWNSTREAM(|4320||None|Vigan.02G111600.01), SYNONYMOUS_CODING(SILENT|caA/caG|Q193|None|Vigan.02G111400.01), UPSTREAM(|1080||None|Vigan.02G111300.01), UPSTREAM(|3009||None|Vigan.02G111500.01)Vigna nepalensis
9295820CA471843.771.00DOWNSTREAM(|3464||None|Vigan.02G111600.01), INTRON(|||None|Vigan.02G111400.01), UPSTREAM(|1936||None|Vigan.02G111300.01), UPSTREAM(|2153||None|Vigan.02G111500.01)Vigna nepalensis
9296341TG521950.771.00DOWNSTREAM(|2943||None|Vigan.02G111600.01), UPSTREAM(|1632||None|Vigan.02G111500.01), UPSTREAM(|2457||None|Vigan.02G111300.01), UTR_3_PRIME(|15||None|Vigan.02G111400.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
9294806AATC391364.730.97DOWNSTREAM(|4477||None|Vigan.02G111600.01), INTRON(|||None|Vigan.02G111400.01), UPSTREAM(|3166||None|Vigan.02G111500.01), UPSTREAM(|923||None|Vigan.02G111300.01)Vigna nepalensis
9295350GAG702431.731.00DOWNSTREAM(|3933||None|Vigan.02G111600.01), INTRON(|||None|Vigan.02G111400.01), UPSTREAM(|1467||None|Vigan.02G111300.01), UPSTREAM(|2622||None|Vigan.02G111500.01)Vigna nepalensis
9295616TTCT451882.731.00DOWNSTREAM(|3667||None|Vigan.02G111600.01), INTRON(|||None|Vigan.02G111400.01), UPSTREAM(|1733||None|Vigan.02G111300.01), UPSTREAM(|2356||None|Vigan.02G111500.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
9295392(TA)21(TA)7451936.731.00DOWNSTREAM(|3891||None|Vigan.02G111600.01), INTRON(|||None|Vigan.02G111400.01), UPSTREAM(|1509||None|Vigan.02G111300.01), UPSTREAM(|2580||None|Vigan.02G111500.01)Vigna nepalensis