Variant information

Chr02:7439509 - 7442305

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 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
7439927GA632320.771.00DOWNSTREAM(|1674||None|Vigan.02G093100.01), DOWNSTREAM(|2686||None|Vigan.02G093300.01), NON_SYNONYMOUS_CODING(MISSENSE|Gtt/Att|V58I|None|Vigan.02G093200.01)Vigna nepalensis
7440328TG622804.771.00DOWNSTREAM(|2075||None|Vigan.02G093100.01), DOWNSTREAM(|2285||None|Vigan.02G093300.01), INTRON(|||None|Vigan.02G093200.01)Vigna nepalensis
7440706TC632600.771.00DOWNSTREAM(|1907||None|Vigan.02G093300.01), DOWNSTREAM(|2453||None|Vigan.02G093100.01), INTRON(|||None|Vigan.02G093200.01)Vigna nepalensis
7440929AG441751.771.00DOWNSTREAM(|1684||None|Vigan.02G093300.01), DOWNSTREAM(|2676||None|Vigan.02G093100.01), INTRON(|||None|Vigan.02G093200.01)Vigna nepalensis
7441074TG652514.771.00DOWNSTREAM(|1539||None|Vigan.02G093300.01), DOWNSTREAM(|2821||None|Vigan.02G093100.01), INTRON(|||None|Vigan.02G093200.01)Vigna nepalensis
7441505TC502021.771.00DOWNSTREAM(|1108||None|Vigan.02G093300.01), DOWNSTREAM(|3252||None|Vigan.02G093100.01), INTRON(|||None|Vigan.02G093200.01)Vigna nepalensis
7441769CA682820.771.00DOWNSTREAM(|3516||None|Vigan.02G093100.01), DOWNSTREAM(|844||None|Vigan.02G093300.01), INTRON(|||None|Vigan.02G093200.01)Vigna nepalensis
7441810CT712860.771.00DOWNSTREAM(|3557||None|Vigan.02G093100.01), DOWNSTREAM(|803||None|Vigan.02G093300.01), INTRON(|||None|Vigan.02G093200.01)Vigna nepalensis
7442226AT662731.771.00DOWNSTREAM(|387||None|Vigan.02G093300.01), DOWNSTREAM(|3973||None|Vigan.02G093100.01), UTR_3_PRIME(|150||None|Vigan.02G093200.01)Vigna nepalensis
7442244GA652648.771.00DOWNSTREAM(|369||None|Vigan.02G093300.01), DOWNSTREAM(|3991||None|Vigan.02G093100.01), UTR_3_PRIME(|168||None|Vigan.02G093200.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
7440306AACTT582748.731.00DOWNSTREAM(|2054||None|Vigan.02G093100.01), DOWNSTREAM(|2306||None|Vigan.02G093300.01), INTRON(|||None|Vigan.02G093200.01)Vigna nepalensis
7440972TAT471636.731.00DOWNSTREAM(|1640||None|Vigan.02G093300.01), DOWNSTREAM(|2720||None|Vigan.02G093100.01), INTRON(|||None|Vigan.02G093200.01)Vigna nepalensis
7441476CCAC461982.731.00DOWNSTREAM(|1136||None|Vigan.02G093300.01), DOWNSTREAM(|3224||None|Vigan.02G093100.01), INTRON(|||None|Vigan.02G093200.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
7439746(CT)29(CT)7361595.731.00DOWNSTREAM(|1494||None|Vigan.02G093100.01), DOWNSTREAM(|2866||None|Vigan.02G093300.01), INTRON(|||None|Vigan.02G093200.01)Vigna nepalensis