VIGGS:Variant information

Chr02:43896475 - 43932627

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SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
43896648	A	G	6	168.84	1.00	DOWNSTREAM(\|2001\|\|None\|Vigan.02G321700.01), SYNONYMOUS_CODING(SILENT\|Ttg/Ctg\|L183\|None\|Vigan.02G321800.01), SYNONYMOUS_CODING(SILENT\|caA/caG\|Q58\|None\|Vigan.02G321900.01)	Vigna nepalensis
43897379	G	T	64	2906.77	1.00	DOWNSTREAM(\|2732\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|96\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43897382	A	C	64	2944.77	1.00	DOWNSTREAM(\|2735\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|99\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43897520	G	C	97	3792.77	1.00	DOWNSTREAM(\|2873\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|237\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43897613	C	T	51	2123.77	1.00	DOWNSTREAM(\|2966\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|330\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43897645	G	A	31	1422.77	1.00	DOWNSTREAM(\|2998\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|362\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43897649	G	A	30	1439.77	1.00	DOWNSTREAM(\|3002\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|366\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43897651	G	T	29	1359.77	1.00	DOWNSTREAM(\|3004\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|368\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43897667	T	C	30	1131.77	1.00	DOWNSTREAM(\|3020\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|384\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43897699	C	G	26	1033.77	1.00	DOWNSTREAM(\|3052\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|416\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43897710	A	G	26	1141.77	1.00	DOWNSTREAM(\|3063\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|427\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43897714	T	G	26	1141.77	1.00	DOWNSTREAM(\|3067\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|431\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43898193	A	G	5	241.84	1.00	DOWNSTREAM(\|3546\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|910\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43898198	C	T	6	241.84	1.00	DOWNSTREAM(\|3551\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|915\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43898222	G	A	15	691.77	1.00	DOWNSTREAM(\|3575\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|939\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43898235	C	T	20	871.77	1.00	DOWNSTREAM(\|3588\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|952\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43898257	C	T	24	1031.77	1.00	DOWNSTREAM(\|3610\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|974\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43898292	C	T	28	1239.77	1.00	DOWNSTREAM(\|3645\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1009\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43898316	G	A	32	1586.77	1.00	DOWNSTREAM(\|3669\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1033\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43898334	T	G	38	1771.77	1.00	DOWNSTREAM(\|3687\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1051\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43898351	C	A	39	1726.77	1.00	DOWNSTREAM(\|3704\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1068\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43898352	A	G	38	1771.77	1.00	DOWNSTREAM(\|3705\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1069\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43898373	T	C	40	1816.77	1.00	DOWNSTREAM(\|3726\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1090\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43898382	C	G	44	2036.77	1.00	DOWNSTREAM(\|3735\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1099\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43898383	C	T	44	1991.77	1.00	DOWNSTREAM(\|3736\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1100\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43898400	A	G	40	1773.77	1.00	DOWNSTREAM(\|3753\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1117\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43898437	T	C	39	1706.77	1.00	DOWNSTREAM(\|3790\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1154\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43898455	C	T	43	1888.77	1.00	DOWNSTREAM(\|3808\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1172\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43898458	C	T	41	1832.77	1.00	DOWNSTREAM(\|3811\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1175\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43898492	A	G	39	1806.77	1.00	DOWNSTREAM(\|3845\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1209\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43898494	A	G	43	1806.77	0.98	DOWNSTREAM(\|3847\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1211\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43898558	A	G	31	1427.77	1.00	DOWNSTREAM(\|3911\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1275\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43898564	A	G	28	1356.77	1.00	DOWNSTREAM(\|3917\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1281\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43898578	G	A	29	1238.77	1.00	DOWNSTREAM(\|3931\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1295\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43899087	G	A	56	2284.77	1.00	DOWNSTREAM(\|4440\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1804\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43899174	T	C	65	2837.77	1.00	DOWNSTREAM(\|4527\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1891\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43899180	A	G	59	2843.77	1.00	DOWNSTREAM(\|4533\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1897\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43899190	T	C	60	2761.77	1.00	DOWNSTREAM(\|4543\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1907\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43899292	G	T	59	2645.77	1.00	DOWNSTREAM(\|4645\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2009\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43899294	G	T	59	2600.77	1.00	DOWNSTREAM(\|4647\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2011\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43899345	T	G	60	2420.77	1.00	DOWNSTREAM(\|4698\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2062\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43899457	G	A	51	1967.77	1.00	DOWNSTREAM(\|4810\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2174\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43899564	A	G	59	2639.77	1.00	DOWNSTREAM(\|4917\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2281\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43899647	T	G	40	1773.77	1.00	DOWNSTREAM(\|5000\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2364\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43899656	A	G	15	1681.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2373\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43899663	T	C	9	466.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2380\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43899892	T	A	52	2031.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2609\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43899913	C	T	52	1980.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2630\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43900044	A	T	59	2222.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2761\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43900220	A	G	48	1934.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2937\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43900420	T	C	60	2378.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3137\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43900754	A	T	44	1976.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3471\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43901065	C	T	23	985.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3782\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43901112	C	T	24	987.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3829\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43901179	A	G	39	1753.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3896\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43901181	A	G	39	1753.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3898\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43901221	T	G	42	1917.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3938\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43901225	C	G	43	1931.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3942\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43901337	T	G	52	2308.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|4054\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43901351	A	G	55	2423.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|4068\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43901570	C	T	61	2494.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|4287\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43901779	G	C	51	2248.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|4496\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43901924	A	T	49	2208.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|4641\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43901943	G	A	56	2657.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|4660\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43901945	A	G	58	2657.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|4662\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43902030	T	A	43	1779.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|4747\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43902096	T	A	52	2023.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|4813\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43902273	G	T	57	1964.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|4990\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43902286	T	G	60	2649.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902335	G	C	50	2019.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902391	C	G	36	1544.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902403	T	C	32	1501.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902404	G	C	33	1501.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902409	A	T	31	1456.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902421	A	T	27	1231.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902425	G	A	28	1231.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902434	A	C	26	1141.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902446	G	A	26	1231.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902482	A	G	19	826.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902486	G	A	19	826.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902499	C	T	21	1096.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902508	G	C	21	1006.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902515	A	G	24	1096.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902517	T	C	24	1051.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902524	T	C	24	1051.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902538	C	T	28	1231.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902539	T	C	28	1231.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902541	G	A	27	1276.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902543	T	C	27	1276.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902550	A	G	27	1231.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902566	G	A	25	1096.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902571	G	A	26	1231.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902576	G	A	28	1231.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902577	G	A	28	1275.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902591	T	A	33	1473.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902706	T	C	49	2145.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902717	G	C	45	2072.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902726	G	T	47	2131.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902763	C	T	36	1771.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902770	C	A	33	1591.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902772	T	C	32	1546.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902776	T	C	30	1366.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902779	C	T	29	1366.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902780	C	T	29	1366.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902782	G	A	29	1366.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902784	G	A	29	1411.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902799	G	A	29	1411.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902813	G	A	30	1411.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902833	G	C	32	1456.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902840	G	A	31	1366.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902843	G	A	30	1366.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902844	G	A	30	1366.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902847	C	A	30	1321.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902864	A	G	34	1591.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902871	A	G	38	1771.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902889	A	G	36	1681.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902903	A	G	43	1906.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902910	A	C	42	1976.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902916	T	C	42	1810.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902950	A	T	52	2311.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902951	T	G	52	2311.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902954	T	C	49	2266.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43903017	C	T	65	2875.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43903023	T	C	63	2926.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43903037	A	G	64	2814.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43903088	C	T	63	2792.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43903091	A	G	62	2798.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43903092	A	G	61	2761.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43903320	A	C	51	2038.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43903385	C	T	62	2506.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43903575	G	T	61	2781.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43903576	T	A	60	2749.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43903612	T	C	67	2644.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43903670	G	T	58	2314.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43903827	T	A	52	2106.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43903937	A	C	52	1992.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43904085	T	C	62	2527.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43904207	T	G	59	2456.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43904250	C	T	57	2263.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43904312	G	A	47	1953.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43904361	A	G	56	2295.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43904401	C	T	50	2442.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43904408	C	G	57	2536.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43904428	C	T	59	2655.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43904440	A	G	55	2605.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43904442	C	T	55	2470.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43904529	G	A	48	2144.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43904533	G	A	47	2122.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43904558	A	G	46	2041.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43904581	G	A	50	2311.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43904585	C	T	52	2311.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43904603	G	A	40	2131.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43904621	G	A	47	2086.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43904627	T	A	49	2221.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43904629	G	A	49	2221.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43904639	C	T	47	2197.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43904646	C	A	47	2104.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43904709	G	A	40	1589.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43904735	G	A	39	1681.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43904757	G	A	39	1707.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43904786	G	A	39	1721.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43904791	A	G	39	1809.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43904810	T	C	35	1574.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43904858	G	A	31	1327.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43904878	A	G	27	1191.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43907283	G	A	33	1494.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43907295	G	A	35	1591.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43907306	G	A	35	1546.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43907316	G	A	37	1589.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43907408	T	A	42	1603.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43907512	C	A	41	1808.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43907524	A	T	41	1858.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43907542	T	G	38	1652.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43907609	C	A	33	1492.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43907614	A	T	36	1562.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43907726	A	T	47	2075.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43907739	A	G	47	2116.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43907743	A	T	48	2087.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43907777	A	C	53	2316.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43907797	A	G	48	2153.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43907860	C	A	54	2165.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43908047	T	G	63	2543.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43908162	G	C	49	2209.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43908181	C	T	53	2491.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43908256	T	G	58	2342.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43908503	G	A	68	2660.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43908581	G	C	53	2414.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43908594	A	G	52	2433.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43908655	G	C	57	2359.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43908928	A	T	36	1502.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43908959	A	G	20	866.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43908963	A	T	19	866.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43908964	T	G	18	866.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43908967	T	A	17	736.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43909545	A	G	46	1773.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43909643	T	A	51	2291.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43909646	A	G	52	2252.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910057	T	C	46	1995.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910176	A	G	34	1382.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910309	G	T	36	1680.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910350	T	C	36	1599.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910407	C	A	42	1826.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910432	C	T	40	1743.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910476	A	T	44	1761.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910594	G	A	44	1744.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910607	A	G	40	1630.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910620	A	G	46	2050.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910621	C	T	45	2050.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910671	T	C	51	2254.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910678	C	T	51	2289.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910681	G	C	50	2203.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910697	C	T	48	2102.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910702	A	C	47	2111.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910716	G	A	47	2171.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910719	T	G	43	2072.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910734	G	C	43	1941.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910781	A	G	42	1907.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910796	T	A	39	1779.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910805	A	G	34	1718.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910810	T	C	38	1771.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910812	C	T	39	1726.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910816	G	C	36	1726.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910817	C	T	36	1766.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910823	T	C	38	1671.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910855	G	A	50	1950.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910895	C	T	54	2426.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910897	C	T	54	2426.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910901	A	G	54	2484.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910902	C	T	55	2439.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910933	G	A	51	2213.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910942	C	A	45	2037.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910951	T	C	46	2131.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910961	A	G	43	1996.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910979	G	A	48	2266.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910988	T	C	48	2266.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910999	T	C	50	2266.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43911009	A	G	47	2356.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43911010	C	T	47	2356.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43911017	G	C	51	2311.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43911021	C	T	50	2266.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43911028	C	T	48	2131.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43911071	G	A	47	2157.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43911077	C	T	47	2165.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43911086	A	G	44	2131.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43911094	A	C	45	2086.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43911112	A	G	46	2266.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43911129	G	A	51	2292.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43911172	A	G	56	2323.77	0.96	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43911180	C	T	57	2547.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43911356	G	A	45	1660.77	0.96	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43911508	C	G	51	2115.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43911584	T	C	67	2966.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43911620	T	A	69	3122.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43911621	G	T	69	3122.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43911734	A	T	52	2281.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43911739	T	G	52	2296.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43911853	G	T	54	2148.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43911899	C	A	60	2574.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43912114	C	T	57	2320.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|4937\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43912262	A	G	52	2051.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|4789\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43912771	C	T	60	2424.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|4280\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43912829	C	T	69	2770.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|4222\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43912887	G	T	70	2799.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|4164\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43912958	T	C	70	3073.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|4093\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43912968	T	A	71	3197.84	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|4083\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43912981	A	T	76	3333.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|4070\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43913029	T	A	81	3649.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|4022\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43913036	C	T	83	3614.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|4015\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43913063	A	G	76	3018.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3988\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43913235	G	T	64	2861.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3816\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43913243	T	C	61	2783.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3808\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43914146	G	A	34	1520.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2905\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43914155	G	A	33	1467.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2896\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43914200	G	A	30	1155.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2851\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43914237	C	T	38	1705.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2814\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43914257	C	T	42	1942.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2794\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43914261	G	A	42	1897.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2790\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43914287	A	T	50	2202.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2764\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43914305	A	T	54	2367.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2746\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43914379	T	A	42	1808.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2672\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43914395	T	C	46	1870.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2656\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43914406	A	G	42	1715.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2645\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43914438	C	T	44	2041.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2613\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43914444	G	A	52	2223.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2607\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43914484	C	T	70	2750.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2567\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43914521	T	A	73	3293.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2530\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43914529	A	G	69	3117.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2522\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43914535	A	T	71	3189.78	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2516\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43914649	C	T	51	2312.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2402\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43914665	G	C	53	2401.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2386\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43914682	T	A	51	2270.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2369\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43914713	A	T	51	2035.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2338\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43914754	T	C	53	2248.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2297\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43914795	A	G	72	3242.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2256\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43914800	C	T	74	3351.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2251\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43914927	G	T	51	2266.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2124\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43914931	T	C	48	2264.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2120\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43915112	C	T	63	2501.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1939\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43915261	T	G	74	2783.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1790\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43915814	A	T	51	2042.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1237\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43915895	G	T	54	2262.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1156\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43916097	A	T	58	2281.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|954\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43916249	A	G	65	2701.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|802\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43916306	T	A	61	2426.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|745\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43916425	A	T	63	2832.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|626\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43916426	G	A	64	2832.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|625\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43916821	G	A	65	2586.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|230\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43917168	A	G	55	2180.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UTR_5_PRIME(\|171\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43917284	T	C	60	2406.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UTR_5_PRIME(\|55\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43917306	T	C	59	2685.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UTR_5_PRIME(\|33\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43917312	G	T	58	2702.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UTR_5_PRIME(\|27\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43917313	C	T	58	2618.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UTR_5_PRIME(\|26\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43918319	C	T	52	2097.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), INTRON(\|\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43918610	C	A	63	2509.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), SYNONYMOUS_CODING(SILENT\|atC/atA\|I378\|None\|Vigan.02G322000.01)	Vigna nepalensis
43918666	G	C	72	2952.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), NON_SYNONYMOUS_CODING(MISSENSE\|gGc/gCc\|G397A\|None\|Vigan.02G322000.01)	Vigna nepalensis
43918817	T	C	48	1822.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), SYNONYMOUS_CODING(SILENT\|taT/taC\|Y447\|None\|Vigan.02G322000.01)	Vigna nepalensis
43918862	T	C	48	1884.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), SYNONYMOUS_CODING(SILENT\|aaT/aaC\|N462\|None\|Vigan.02G322000.01)	Vigna nepalensis
43918922	G	C	48	1914.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), SYNONYMOUS_CODING(SILENT\|ctG/ctC\|L482\|None\|Vigan.02G322000.01)	Vigna nepalensis
43919224	C	G	56	2188.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UTR_3_PRIME(\|251\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43919336	C	T	56	2268.77	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UTR_3_PRIME(\|363\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43920129	C	G	50	2056.77	1.00	DOWNSTREAM(\|692\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|4466\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43920187	A	T	57	2263.77	1.00	DOWNSTREAM(\|750\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|4408\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43920244	T	G	66	2651.77	1.00	DOWNSTREAM(\|807\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|4351\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43920312	G	A	67	2604.77	1.00	DOWNSTREAM(\|875\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|4283\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43920349	A	T	64	2502.77	1.00	DOWNSTREAM(\|912\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|4246\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43920600	T	C	44	1943.77	1.00	DOWNSTREAM(\|1163\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3995\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43920605	A	G	42	1943.77	1.00	DOWNSTREAM(\|1168\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3990\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43920855	A	T	30	1317.77	1.00	DOWNSTREAM(\|1418\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3740\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43920872	T	G	33	1449.77	1.00	DOWNSTREAM(\|1435\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3723\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43920922	A	C	46	1883.77	1.00	DOWNSTREAM(\|1485\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3673\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43920952	T	C	47	1881.77	1.00	DOWNSTREAM(\|1515\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3643\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43921013	T	A	51	2371.77	1.00	DOWNSTREAM(\|1576\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3582\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43921037	A	C	60	2761.77	1.00	DOWNSTREAM(\|1600\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3558\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43921038	T	A	62	2941.77	1.00	DOWNSTREAM(\|1601\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3557\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43921063	T	A	59	2626.77	1.00	DOWNSTREAM(\|1626\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3532\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43921083	G	T	62	2754.77	1.00	DOWNSTREAM(\|1646\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3512\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43921412	G	T	69	2842.77	1.00	DOWNSTREAM(\|1975\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3183\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43921538	C	T	57	2556.77	1.00	DOWNSTREAM(\|2101\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3057\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43921570	T	C	57	2488.77	1.00	DOWNSTREAM(\|2133\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3025\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43921585	A	G	54	2410.77	1.00	DOWNSTREAM(\|2148\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3010\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43921659	G	A	66	2973.77	1.00	DOWNSTREAM(\|2222\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2936\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43921692	A	G	66	2564.77	1.00	DOWNSTREAM(\|2255\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2903\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43921719	T	G	66	3031.77	1.00	DOWNSTREAM(\|2282\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2876\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43921738	A	C	61	2896.77	1.00	DOWNSTREAM(\|2301\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2857\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43921739	T	C	61	2761.77	1.00	DOWNSTREAM(\|2302\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2856\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43922095	T	C	68	2693.77	1.00	DOWNSTREAM(\|2658\|\|None\|Vigan.02G322000.01), DOWNSTREAM(\|4857\|\|None\|Vigan.02G322200.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2500\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43922320	A	G	48	2033.77	1.00	DOWNSTREAM(\|2883\|\|None\|Vigan.02G322000.01), DOWNSTREAM(\|4632\|\|None\|Vigan.02G322200.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2275\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43922356	G	A	56	2491.77	1.00	DOWNSTREAM(\|2919\|\|None\|Vigan.02G322000.01), DOWNSTREAM(\|4596\|\|None\|Vigan.02G322200.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2239\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43922364	G	A	58	2581.77	1.00	DOWNSTREAM(\|2927\|\|None\|Vigan.02G322000.01), DOWNSTREAM(\|4588\|\|None\|Vigan.02G322200.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2231\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43922365	G	A	58	2581.77	1.00	DOWNSTREAM(\|2928\|\|None\|Vigan.02G322000.01), DOWNSTREAM(\|4587\|\|None\|Vigan.02G322200.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2230\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43922444	G	T	57	2212.77	1.00	DOWNSTREAM(\|3007\|\|None\|Vigan.02G322000.01), DOWNSTREAM(\|4508\|\|None\|Vigan.02G322200.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2151\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43922646	G	T	45	2049.77	1.00	DOWNSTREAM(\|3209\|\|None\|Vigan.02G322000.01), DOWNSTREAM(\|4306\|\|None\|Vigan.02G322200.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1949\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43922670	T	C	47	2016.77	1.00	DOWNSTREAM(\|3233\|\|None\|Vigan.02G322000.01), DOWNSTREAM(\|4282\|\|None\|Vigan.02G322200.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1925\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43922698	C	T	50	2228.77	1.00	DOWNSTREAM(\|3261\|\|None\|Vigan.02G322000.01), DOWNSTREAM(\|4254\|\|None\|Vigan.02G322200.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1897\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43922714	G	A	50	2237.77	1.00	DOWNSTREAM(\|3277\|\|None\|Vigan.02G322000.01), DOWNSTREAM(\|4238\|\|None\|Vigan.02G322200.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1881\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43922751	T	A	58	2370.77	1.00	DOWNSTREAM(\|3314\|\|None\|Vigan.02G322000.01), DOWNSTREAM(\|4201\|\|None\|Vigan.02G322200.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1844\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43922877	A	G	58	2587.77	1.00	DOWNSTREAM(\|3440\|\|None\|Vigan.02G322000.01), DOWNSTREAM(\|4075\|\|None\|Vigan.02G322200.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1718\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43923006	A	G	65	2645.77	1.00	DOWNSTREAM(\|3569\|\|None\|Vigan.02G322000.01), DOWNSTREAM(\|3946\|\|None\|Vigan.02G322200.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1589\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43923021	G	A	68	2839.77	1.00	DOWNSTREAM(\|3584\|\|None\|Vigan.02G322000.01), DOWNSTREAM(\|3931\|\|None\|Vigan.02G322200.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1574\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43923156	T	A	69	2624.77	1.00	DOWNSTREAM(\|3719\|\|None\|Vigan.02G322000.01), DOWNSTREAM(\|3796\|\|None\|Vigan.02G322200.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1439\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43923197	G	T	65	2665.77	1.00	DOWNSTREAM(\|3755\|\|None\|Vigan.02G322200.01), DOWNSTREAM(\|3760\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1398\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43923511	A	G	69	2812.77	1.00	DOWNSTREAM(\|3441\|\|None\|Vigan.02G322200.01), DOWNSTREAM(\|4074\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1084\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43923720	G	A	63	2367.77	1.00	DOWNSTREAM(\|3232\|\|None\|Vigan.02G322200.01), DOWNSTREAM(\|4283\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|875\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43923822	C	G	31	1319.77	1.00	DOWNSTREAM(\|3130\|\|None\|Vigan.02G322200.01), DOWNSTREAM(\|4385\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|773\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43923828	C	G	28	1340.77	1.00	DOWNSTREAM(\|3124\|\|None\|Vigan.02G322200.01), DOWNSTREAM(\|4391\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|767\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43924068	A	G	41	1856.77	1.00	DOWNSTREAM(\|2884\|\|None\|Vigan.02G322200.01), DOWNSTREAM(\|4631\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|527\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43924072	T	C	43	2021.77	1.00	DOWNSTREAM(\|2880\|\|None\|Vigan.02G322200.01), DOWNSTREAM(\|4635\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|523\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43924078	G	A	45	2013.77	1.00	DOWNSTREAM(\|2874\|\|None\|Vigan.02G322200.01), DOWNSTREAM(\|4641\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|517\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43924134	C	T	48	2339.77	1.00	DOWNSTREAM(\|2818\|\|None\|Vigan.02G322200.01), DOWNSTREAM(\|4697\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|461\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43924158	C	A	50	2305.77	1.00	DOWNSTREAM(\|2794\|\|None\|Vigan.02G322200.01), DOWNSTREAM(\|4721\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|437\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43924237	T	C	57	2310.77	1.00	DOWNSTREAM(\|2715\|\|None\|Vigan.02G322200.01), DOWNSTREAM(\|4800\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|358\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43924330	A	C	44	2004.77	1.00	DOWNSTREAM(\|2622\|\|None\|Vigan.02G322200.01), DOWNSTREAM(\|4893\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|265\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43924345	A	C	41	1816.77	1.00	DOWNSTREAM(\|2607\|\|None\|Vigan.02G322200.01), DOWNSTREAM(\|4908\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|250\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43924393	C	A	24	976.77	1.00	DOWNSTREAM(\|2559\|\|None\|Vigan.02G322200.01), DOWNSTREAM(\|4956\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|202\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43924472	T	C	10	373.77	1.00	DOWNSTREAM(\|2480\|\|None\|Vigan.02G322200.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|123\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43924499	C	A	34	1261.77	1.00	DOWNSTREAM(\|2453\|\|None\|Vigan.02G322200.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|96\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43924782	G	C	25	186.77	0.28	DOWNSTREAM(\|2170\|\|None\|Vigan.02G322200.01), INTRON(\|\|\|None\|Vigan.02G321900.01), SYNONYMOUS_CODING(SILENT\|gtG/gtC\|V33\|None\|Vigan.02G322100.01)	Vigna nepalensis
43925637	G	T	32	285.77	0.34	DOWNSTREAM(\|1315\|\|None\|Vigan.02G322200.01), DOWNSTREAM(\|4777\|\|None\|Vigan.02G322300.01), INTRON(\|\|\|None\|Vigan.02G321900.01), INTRON(\|\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43925706	G	A	55	671.77	0.49	DOWNSTREAM(\|1246\|\|None\|Vigan.02G322200.01), DOWNSTREAM(\|4708\|\|None\|Vigan.02G322300.01), INTRON(\|\|\|None\|Vigan.02G321900.01), SYNONYMOUS_CODING(SILENT\|ctG/ctA\|L316\|None\|Vigan.02G322100.01)	Vigna nepalensis
43925988	T	A	40	1486.77	1.00	DOWNSTREAM(\|4426\|\|None\|Vigan.02G322300.01), DOWNSTREAM(\|964\|\|None\|Vigan.02G322200.01), INTRON(\|\|\|None\|Vigan.02G321900.01), SYNONYMOUS_CODING(SILENT\|atT/atA\|I410\|None\|Vigan.02G322100.01)	Vigna nepalensis
43926312	C	T	38	413.77	0.34	DOWNSTREAM(\|4102\|\|None\|Vigan.02G322300.01), DOWNSTREAM(\|640\|\|None\|Vigan.02G322200.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UTR_3_PRIME(\|39\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43926454	A	G	35	1325.77	1.00	DOWNSTREAM(\|3960\|\|None\|Vigan.02G322300.01), DOWNSTREAM(\|498\|\|None\|Vigan.02G322200.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UTR_3_PRIME(\|181\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43927671	T	C	60	2433.77	1.00	DOWNSTREAM(\|1151\|\|None\|Vigan.02G322100.01), DOWNSTREAM(\|2743\|\|None\|Vigan.02G322300.01), INTRON(\|\|\|None\|Vigan.02G321900.01), INTRON(\|\|\|None\|Vigan.02G322200.01)	Vigna nepalensis
43928113	T	C	52	2033.77	1.00	DOWNSTREAM(\|1593\|\|None\|Vigan.02G322100.01), DOWNSTREAM(\|2301\|\|None\|Vigan.02G322300.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UTR_5_PRIME(\|71\|\|None\|Vigan.02G322200.01)	Vigna nepalensis
43928260	T	C	46	1847.77	1.00	DOWNSTREAM(\|1740\|\|None\|Vigan.02G322100.01), DOWNSTREAM(\|2154\|\|None\|Vigan.02G322300.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|86\|\|None\|Vigan.02G322200.01)	Vigna nepalensis
43928553	G	A	33	1264.77	1.00	DOWNSTREAM(\|1861\|\|None\|Vigan.02G322300.01), DOWNSTREAM(\|2033\|\|None\|Vigan.02G322100.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|379\|\|None\|Vigan.02G322200.01)	Vigna nepalensis
43928789	G	A	47	1836.77	1.00	DOWNSTREAM(\|1625\|\|None\|Vigan.02G322300.01), DOWNSTREAM(\|2269\|\|None\|Vigan.02G322100.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|615\|\|None\|Vigan.02G322200.01)	Vigna nepalensis
43928897	C	T	47	1857.77	1.00	DOWNSTREAM(\|1517\|\|None\|Vigan.02G322300.01), DOWNSTREAM(\|2377\|\|None\|Vigan.02G322100.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|723\|\|None\|Vigan.02G322200.01)	Vigna nepalensis
43929013	T	A	48	2097.77	1.00	DOWNSTREAM(\|1401\|\|None\|Vigan.02G322300.01), DOWNSTREAM(\|2493\|\|None\|Vigan.02G322100.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|839\|\|None\|Vigan.02G322200.01)	Vigna nepalensis
43929014	A	T	47	2142.77	1.00	DOWNSTREAM(\|1400\|\|None\|Vigan.02G322300.01), DOWNSTREAM(\|2494\|\|None\|Vigan.02G322100.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|840\|\|None\|Vigan.02G322200.01)	Vigna nepalensis
43929018	C	T	43	2039.77	1.00	DOWNSTREAM(\|1396\|\|None\|Vigan.02G322300.01), DOWNSTREAM(\|2498\|\|None\|Vigan.02G322100.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|844\|\|None\|Vigan.02G322200.01)	Vigna nepalensis
43929046	A	G	48	2040.77	1.00	DOWNSTREAM(\|1368\|\|None\|Vigan.02G322300.01), DOWNSTREAM(\|2526\|\|None\|Vigan.02G322100.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|872\|\|None\|Vigan.02G322200.01)	Vigna nepalensis
43929156	T	C	46	1942.77	0.98	DOWNSTREAM(\|1258\|\|None\|Vigan.02G322300.01), DOWNSTREAM(\|2636\|\|None\|Vigan.02G322100.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|982\|\|None\|Vigan.02G322200.01)	Vigna nepalensis
43929182	A	G	49	2204.77	1.00	DOWNSTREAM(\|1232\|\|None\|Vigan.02G322300.01), DOWNSTREAM(\|2662\|\|None\|Vigan.02G322100.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1008\|\|None\|Vigan.02G322200.01)	Vigna nepalensis
43929443	C	A	62	2736.77	1.00	DOWNSTREAM(\|2923\|\|None\|Vigan.02G322100.01), DOWNSTREAM(\|971\|\|None\|Vigan.02G322300.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1269\|\|None\|Vigan.02G322200.01)	Vigna nepalensis
43929574	G	T	54	2076.77	1.00	DOWNSTREAM(\|3054\|\|None\|Vigan.02G322100.01), DOWNSTREAM(\|840\|\|None\|Vigan.02G322300.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1400\|\|None\|Vigan.02G322200.01)	Vigna nepalensis
43929603	T	C	57	2217.77	1.00	DOWNSTREAM(\|3083\|\|None\|Vigan.02G322100.01), DOWNSTREAM(\|811\|\|None\|Vigan.02G322300.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1429\|\|None\|Vigan.02G322200.01)	Vigna nepalensis
43929699	T	G	54	2323.77	1.00	DOWNSTREAM(\|3179\|\|None\|Vigan.02G322100.01), DOWNSTREAM(\|715\|\|None\|Vigan.02G322300.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1525\|\|None\|Vigan.02G322200.01)	Vigna nepalensis
43930062	C	T	44	1898.77	1.00	DOWNSTREAM(\|352\|\|None\|Vigan.02G322300.01), DOWNSTREAM(\|3542\|\|None\|Vigan.02G322100.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1888\|\|None\|Vigan.02G322200.01)	Vigna nepalensis
43930170	T	C	61	2453.77	1.00	DOWNSTREAM(\|244\|\|None\|Vigan.02G322300.01), DOWNSTREAM(\|3650\|\|None\|Vigan.02G322100.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1996\|\|None\|Vigan.02G322200.01)	Vigna nepalensis
43930362	T	G	51	1986.77	1.00	DOWNSTREAM(\|3842\|\|None\|Vigan.02G322100.01), DOWNSTREAM(\|52\|\|None\|Vigan.02G322300.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2188\|\|None\|Vigan.02G322200.01)	Vigna nepalensis
43930597	G	C	58	2284.77	1.00	DOWNSTREAM(\|4077\|\|None\|Vigan.02G322100.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2423\|\|None\|Vigan.02G322200.01), UTR_3_PRIME(\|74\|\|None\|Vigan.02G322300.01)	Vigna nepalensis
43931292	A	C	48	1906.77	1.00	DOWNSTREAM(\|4772\|\|None\|Vigan.02G322100.01), INTRON(\|\|\|None\|Vigan.02G321900.01), INTRON(\|\|\|None\|Vigan.02G322300.01), UPSTREAM(\|3118\|\|None\|Vigan.02G322200.01)	Vigna nepalensis
43932194	A	G	39	1421.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|Agt/Ggt\|S124G\|None\|Vigan.02G321900.01), SYNONYMOUS_CODING(SILENT\|acT/acC\|T113\|None\|Vigan.02G322300.01), UPSTREAM(\|4020\|\|None\|Vigan.02G322200.01)	Vigna nepalensis
43932311	T	A	45	1560.77	1.00	SYNONYMOUS_CODING(SILENT\|cgA/cgT\|R74\|None\|Vigan.02G322300.01), UPSTREAM(\|4137\|\|None\|Vigan.02G322200.01), UTR_3_PRIME(\|16\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43932616	G	A	65	2478.77	1.00	UPSTREAM(\|4442\|\|None\|Vigan.02G322200.01), UTR_3_PRIME(\|321\|\|None\|Vigan.02G321900.01), UTR_5_PRIME(\|84\|\|None\|Vigan.02G322300.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
43897316	GCC	G	29	1553.73	1.00	DOWNSTREAM(\|2670\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|34\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43897318	C	CAAGAA	29	1553.73	1.00	DOWNSTREAM(\|2672\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|36\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43897680	A	AGCTATATTAGCTATATTT	18	554.73	0.67	DOWNSTREAM(\|3034\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|398\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43897688	T	TAGC	25	149.73	0.24	DOWNSTREAM(\|3042\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|406\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43897689	T	TATATTTGCTATATTC	25	149.73	0.24	DOWNSTREAM(\|3043\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|407\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43898362	A	AC	40	1807.73	1.00	DOWNSTREAM(\|3716\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1080\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43899215	GA	G	59	2601.73	1.00	DOWNSTREAM(\|4569\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1933\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43899271	AGAT	A	52	2285.73	1.00	DOWNSTREAM(\|4625\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1989\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43899276	AGAG	A	50	2285.73	1.00	DOWNSTREAM(\|4630\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1994\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43899281	T	TTTATTATTTTC	49	2527.73	1.00	DOWNSTREAM(\|4635\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1999\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43899284	AG	A	54	2437.73	1.00	DOWNSTREAM(\|4638\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2002\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43899288	A	ACAC	54	2572.73	1.00	DOWNSTREAM(\|4642\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2006\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43899291	A	AACT	54	2726.73	1.00	DOWNSTREAM(\|4645\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2009\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43899580	T	TA	58	2549.73	1.00	DOWNSTREAM(\|4934\|\|None\|Vigan.02G321700.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2298\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43899648	GTCT	G	40	1763.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2366\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43899651	T	TGG	40	1762.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2369\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43899659	AGT	A	11	592.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2377\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43899664	ATTAGTGTTG	A	9	457.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2382\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43899677	AGTTGCTTAACGTGAAAGAGGAGTTTAGGTTCCTAACATTTTTTGATT	A	5	322.75	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2395\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43899965	TGGTA	T	56	2422.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2683\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43900321	C	CTTT	32	1376.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3039\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43900687	CTAACACGATG	C	37	1626.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3405\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43900729	T	TA	39	1781.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3447\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43900736	A	ATAAT	46	2276.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3454\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43900745	A	ATAC	45	2077.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3463\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43900808	CA	C	41	1374.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3526\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43900840	T	TATTAA	35	1617.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3558\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43900841	G	GTAGC	34	1659.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3559\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43900844	A	ATG	33	1489.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3562\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43901340	GA	G	52	2375.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|4058\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43901685	T	TTATTTTCAC	61	3008.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|4403\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43901785	TTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATA	T	49	2258.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|4503\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43902219	G	GA	50	2020.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|4937\|\|None\|Vigan.02G321800.01)	Vigna nepalensis
43902284	TC	T	59	2640.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902411	C	CCGTAA	30	1402.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902423	G	GT	28	1222.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902438	AT	A	26	1177.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902442	GCA	G	27	1267.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902450	ACTCGG	A	24	1132.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902459	A	AGT	23	1132.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902463	T	TCACG	24	1177.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902465	AG	A	24	1177.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902497	A	ATT	23	1042.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902734	AAT	A	41	1852.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902738	T	TTA	42	1897.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902751	TCAGTGAGC	T	39	1762.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902787	GGATCA	G	30	1402.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43902797	G	GAATCC	30	1357.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43903485	AT	A	60	2178.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43903560	CG	C	55	2372.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43904429	GAA	G	60	2691.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43904482	ATAACT	A	51	2219.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43904626	T	TC	48	2257.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43908177	A	ATTGATAATAATCATATAC	53	2842.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43908185	T	TGGGACCGGTTAGTACAACTTTTATCGAATG	53	2839.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43908319	AGGT	A	49	2122.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43908373	T	TTA	50	2020.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43908881	AT	A	44	1726.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43909731	G	GGA	37	1604.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43909888	T	TA	55	1578.73	0.98	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910051	T	TAAC	41	1776.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910110	GA	G	39	1136.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910656	T	TC	46	1770.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910706	TC	T	50	2257.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43910737	TTTTCGATACTTAAATCAATAAATTGTCTGTACAGGAGTTC	T	43	1932.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43911289	A	AGGTAAAATGTC	38	1739.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43911395	G	GA	35	1144.75	0.94	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43911460	T	TACACACA	48	2122.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43911547	A	AAAAATATCATGTGTATTATATT	45	2569.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43911578	AT	A	66	2957.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43911817	TATAGACATGGTATGGAATATG	T	52	2253.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43912343	T	TAA	53	1995.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|4707\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43913193	GA	G	59	1601.73	0.98	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3857\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43914511	T	TC	71	3130.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2539\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43914566	A	ACCTCTT	66	2902.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2484\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43914600	A	AC	48	1894.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2450\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43915073	TA	T	58	1735.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1977\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43915426	CTA	C	65	2854.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1624\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43915970	AC	A	54	2077.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1080\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43916872	G	GT	46	1270.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|178\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43919079	TG	T	58	2270.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01), UTR_3_PRIME(\|107\|\|None\|Vigan.02G322000.01)	Vigna nepalensis
43919985	CT	C	46	2024.73	1.00	DOWNSTREAM(\|549\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|4609\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43919995	ACTTGTTTATAGCAACCGTG	A	52	2237.73	1.00	DOWNSTREAM(\|559\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|4599\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43920455	GT	G	64	2549.73	1.00	DOWNSTREAM(\|1019\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|4139\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43920560	T	TA	48	1689.73	1.00	DOWNSTREAM(\|1124\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|4034\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43920656	TTA	T	37	1671.73	1.00	DOWNSTREAM(\|1220\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3938\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43920668	AT	A	42	1773.73	1.00	DOWNSTREAM(\|1232\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3926\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43920732	T	TA	9	213.74	1.00	DOWNSTREAM(\|1296\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3862\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43920784	TACACAC	T	11	84.73	0.55	DOWNSTREAM(\|1348\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3810\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43921003	AT	A	51	2215.73	1.00	DOWNSTREAM(\|1567\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3591\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43921525	A	ATAT	55	2658.73	1.00	DOWNSTREAM(\|2089\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3069\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43921665	T	TA	71	3140.73	1.00	DOWNSTREAM(\|2229\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2929\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43921725	GTAT	G	65	2913.73	1.00	DOWNSTREAM(\|2289\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2869\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43921800	TACAACCCGTTTCAAAGTAATATTAGTTTTAGTCATATCAAATAGTTTCAAAA	T	50	2193.73	1.00	DOWNSTREAM(\|2364\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2794\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43922279	C	CTGTA	56	2589.73	1.00	DOWNSTREAM(\|2843\|\|None\|Vigan.02G322000.01), DOWNSTREAM(\|4672\|\|None\|Vigan.02G322200.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2315\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43922880	TTAG	T	57	2578.73	1.00	DOWNSTREAM(\|3444\|\|None\|Vigan.02G322000.01), DOWNSTREAM(\|4071\|\|None\|Vigan.02G322200.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1714\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43923238	C	CCGATTATTATAA	59	2998.73	1.00	DOWNSTREAM(\|3713\|\|None\|Vigan.02G322200.01), DOWNSTREAM(\|3802\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1356\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43923298	T	TATTTA	49	2185.73	1.00	DOWNSTREAM(\|3653\|\|None\|Vigan.02G322200.01), DOWNSTREAM(\|3862\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1296\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43923625	GAA	G	48	2116.73	1.00	DOWNSTREAM(\|3326\|\|None\|Vigan.02G322200.01), DOWNSTREAM(\|4189\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|969\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43923644	GT	G	59	2065.73	1.00	DOWNSTREAM(\|3307\|\|None\|Vigan.02G322200.01), DOWNSTREAM(\|4208\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|950\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43923921	T	TG	39	1234.73	0.85	DOWNSTREAM(\|3030\|\|None\|Vigan.02G322200.01), DOWNSTREAM(\|4485\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|673\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43924114	AC	A	49	2152.73	1.00	DOWNSTREAM(\|2837\|\|None\|Vigan.02G322200.01), DOWNSTREAM(\|4678\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|480\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43924178	G	GC	53	2326.73	1.00	DOWNSTREAM(\|2773\|\|None\|Vigan.02G322200.01), DOWNSTREAM(\|4742\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|416\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43924354	C	CG	38	1268.8	0.92	DOWNSTREAM(\|2597\|\|None\|Vigan.02G322200.01), DOWNSTREAM(\|4918\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|240\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43924355	A	AATATAGCAAATATAGCT	37	1982.73	1.00	DOWNSTREAM(\|2596\|\|None\|Vigan.02G322200.01), DOWNSTREAM(\|4919\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|239\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43924557	G	GTCT	56	2487.73	1.00	DOWNSTREAM(\|2394\|\|None\|Vigan.02G322200.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|37\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43926888	T	TA	64	1850.73	1.00	DOWNSTREAM(\|3525\|\|None\|Vigan.02G322300.01), DOWNSTREAM(\|369\|\|None\|Vigan.02G322100.01), DOWNSTREAM(\|63\|\|None\|Vigan.02G322200.01), INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43927720	AATACATGTCACTAAGGCTAGATATACTTCTGGC	A	50	2078.73	1.00	DOWNSTREAM(\|1201\|\|None\|Vigan.02G322100.01), DOWNSTREAM(\|2693\|\|None\|Vigan.02G322300.01), INTRON(\|\|\|None\|Vigan.02G321900.01), INTRON(\|\|\|None\|Vigan.02G322200.01)	Vigna nepalensis
43927906	A	AT	68	2673.73	1.00	DOWNSTREAM(\|1387\|\|None\|Vigan.02G322100.01), DOWNSTREAM(\|2507\|\|None\|Vigan.02G322300.01), INTRON(\|\|\|None\|Vigan.02G321900.01), INTRON(\|\|\|None\|Vigan.02G322200.01)	Vigna nepalensis
43929166	TA	T	51	2378.73	1.00	DOWNSTREAM(\|1247\|\|None\|Vigan.02G322300.01), DOWNSTREAM(\|2647\|\|None\|Vigan.02G322100.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|993\|\|None\|Vigan.02G322200.01)	Vigna nepalensis
43929431	TA	T	57	2536.73	1.00	DOWNSTREAM(\|2912\|\|None\|Vigan.02G322100.01), DOWNSTREAM(\|982\|\|None\|Vigan.02G322300.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1258\|\|None\|Vigan.02G322200.01)	Vigna nepalensis
43929676	AT	A	46	2002.73	1.00	DOWNSTREAM(\|3157\|\|None\|Vigan.02G322100.01), DOWNSTREAM(\|737\|\|None\|Vigan.02G322300.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1503\|\|None\|Vigan.02G322200.01)	Vigna nepalensis
43930037	CT	C	43	1777.73	1.00	DOWNSTREAM(\|3518\|\|None\|Vigan.02G322100.01), DOWNSTREAM(\|376\|\|None\|Vigan.02G322300.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1864\|\|None\|Vigan.02G322200.01)	Vigna nepalensis
43930204	T	TAGTATATGTAAAAAAACTC	55	2734.73	1.00	DOWNSTREAM(\|209\|\|None\|Vigan.02G322300.01), DOWNSTREAM(\|3685\|\|None\|Vigan.02G322100.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|2031\|\|None\|Vigan.02G322200.01)	Vigna nepalensis
43931414	GT	G	32	923.73	1.00	DOWNSTREAM(\|4895\|\|None\|Vigan.02G322100.01), INTRON(\|\|\|None\|Vigan.02G321900.01), INTRON(\|\|\|None\|Vigan.02G322300.01), UPSTREAM(\|3241\|\|None\|Vigan.02G322200.01)	Vigna nepalensis
43931433	T	TTATATA	34	1383.73	1.00	DOWNSTREAM(\|4914\|\|None\|Vigan.02G322100.01), INTRON(\|\|\|None\|Vigan.02G321900.01), INTRON(\|\|\|None\|Vigan.02G322300.01), UPSTREAM(\|3260\|\|None\|Vigan.02G322200.01)	Vigna nepalensis

SSR-associated indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
43910270	(AT)28	(AT)13	37	1592.73	1.00	INTRON(\|\|\|None\|Vigan.02G321900.01)	Vigna nepalensis
43920782	(AT)22	(AT)21	12	60.73	0.42	DOWNSTREAM(\|1346\|\|None\|Vigan.02G322000.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|3812\|\|None\|Vigan.02G322100.01)	Vigna nepalensis
43929183	(AT)33	(AT)8	50	2240.73	1.00	DOWNSTREAM(\|1230\|\|None\|Vigan.02G322300.01), DOWNSTREAM(\|2664\|\|None\|Vigan.02G322100.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1010\|\|None\|Vigan.02G322200.01)	Vigna nepalensis
43929188	(AT)33	(AT)10	50	2236.73	1.00	DOWNSTREAM(\|1225\|\|None\|Vigan.02G322300.01), DOWNSTREAM(\|2669\|\|None\|Vigan.02G322100.01), INTRON(\|\|\|None\|Vigan.02G321900.01), UPSTREAM(\|1015\|\|None\|Vigan.02G322200.01)	Vigna nepalensis