Variant information

Chr02:39988004 - 39993046

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 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
39988088TC501997.771.00UTR_5_PRIME(|31||None|Vigan.02G288000.01)Vigna nepalensis
39988274AT542110.771.00INTRON(|||None|Vigan.02G288000.01)Vigna nepalensis
39988626GT542127.771.00INTRON(|||None|Vigan.02G288000.01)Vigna nepalensis
39988738AT692899.771.00INTRON(|||None|Vigan.02G288000.01)Vigna nepalensis
39988942TG662948.771.00INTRON(|||None|Vigan.02G288000.01)Vigna nepalensis
39988954AT713467.771.00INTRON(|||None|Vigan.02G288000.01)Vigna nepalensis
39988978TC753240.771.00INTRON(|||None|Vigan.02G288000.01)Vigna nepalensis
39989027TA592571.771.00INTRON(|||None|Vigan.02G288000.01)Vigna nepalensis
39989065CA532061.771.00INTRON(|||None|Vigan.02G288000.01)Vigna nepalensis
39989131CT652456.771.00INTRON(|||None|Vigan.02G288000.01)Vigna nepalensis
39989197AT602423.771.00INTRON(|||None|Vigan.02G288000.01)Vigna nepalensis
39989290TC702761.771.00INTRON(|||None|Vigan.02G288000.01)Vigna nepalensis
39989742TC813251.771.00INTRON(|||None|Vigan.02G288000.01)Vigna nepalensis
39990139GA451767.771.00INTRON(|||None|Vigan.02G288000.01)Vigna nepalensis
39990155AG391762.771.00INTRON(|||None|Vigan.02G288000.01)Vigna nepalensis
39990163AT421848.771.00INTRON(|||None|Vigan.02G288000.01)Vigna nepalensis
39990403TA572220.771.00INTRON(|||None|Vigan.02G288000.01)Vigna nepalensis
39990542GC461744.771.00SYNONYMOUS_CODING(SILENT|ggG/ggC|G109|None|Vigan.02G288000.01)Vigna nepalensis
39990847CG552169.771.00INTRON(|||None|Vigan.02G288000.01)Vigna nepalensis
39991055CT542186.771.00INTRON(|||None|Vigan.02G288000.01)Vigna nepalensis
39991365CA542128.771.00INTRON(|||None|Vigan.02G288000.01)Vigna nepalensis
39991442AG582360.771.00NON_SYNONYMOUS_CODING(MISSENSE|aAa/aGa|K227R|None|Vigan.02G288000.01)Vigna nepalensis
39991557CA561937.771.00SYNONYMOUS_CODING(SILENT|acC/acA|T265|None|Vigan.02G288000.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
39988326CCAA411780.731.00INTRON(|||None|Vigan.02G288000.01)Vigna nepalensis
39988953AATT743374.731.00INTRON(|||None|Vigan.02G288000.01)Vigna nepalensis
39989031GAG562489.731.00INTRON(|||None|Vigan.02G288000.01)Vigna nepalensis
39989515AAG582083.731.00INTRON(|||None|Vigan.02G288000.01)Vigna nepalensis
39989959AACATGTGTCTCGTGTCACAAT381942.731.00INTRON(|||None|Vigan.02G288000.01)Vigna nepalensis
39990759GGGA542366.731.00INTRON(|||None|Vigan.02G288000.01), SPLICE_SITE_REGION(|||None|Vigan.02G288000.01)Vigna nepalensis
39992017CCT571752.731.00INTRON(|||None|Vigan.02G288000.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
39989903(AAT)7(AAT)8411906.731.00INTRON(|||None|Vigan.02G288000.01)Vigna nepalensis