VIGGS:Variant information

Chr02:3851132 - 3854720

Filter

[SNPs] [Indels]

SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
3851693	T	G	65	2359.77	1.00	DOWNSTREAM(\|3608\|\|None\|Vigan.02G051100.01), INTRON(\|\|\|None\|Vigan.02G051200.01), UPSTREAM(\|4098\|\|None\|Vigan.02G051300.01)	Vigna nepalensis
3851905	G	A	64	2492.77	1.00	DOWNSTREAM(\|3820\|\|None\|Vigan.02G051100.01), INTRON(\|\|\|None\|Vigan.02G051200.01), UPSTREAM(\|3886\|\|None\|Vigan.02G051300.01)	Vigna nepalensis
3852705	T	G	58	2594.77	1.00	DOWNSTREAM(\|4620\|\|None\|Vigan.02G051100.01), INTRON(\|\|\|None\|Vigan.02G051200.01), UPSTREAM(\|3086\|\|None\|Vigan.02G051300.01)	Vigna nepalensis
3852712	A	C	60	2644.77	1.00	DOWNSTREAM(\|4627\|\|None\|Vigan.02G051100.01), INTRON(\|\|\|None\|Vigan.02G051200.01), UPSTREAM(\|3079\|\|None\|Vigan.02G051300.01)	Vigna nepalensis
3852810	C	G	63	2302.77	1.00	DOWNSTREAM(\|4725\|\|None\|Vigan.02G051100.01), INTRON(\|\|\|None\|Vigan.02G051200.01), UPSTREAM(\|2981\|\|None\|Vigan.02G051300.01)	Vigna nepalensis
3852855	T	C	56	2164.77	1.00	DOWNSTREAM(\|4770\|\|None\|Vigan.02G051100.01), INTRON(\|\|\|None\|Vigan.02G051200.01), UPSTREAM(\|2936\|\|None\|Vigan.02G051300.01)	Vigna nepalensis
3852884	T	C	49	2063.77	1.00	DOWNSTREAM(\|4799\|\|None\|Vigan.02G051100.01), INTRON(\|\|\|None\|Vigan.02G051200.01), UPSTREAM(\|2907\|\|None\|Vigan.02G051300.01)	Vigna nepalensis
3852985	G	T	65	2572.77	1.00	DOWNSTREAM(\|4900\|\|None\|Vigan.02G051100.01), INTRON(\|\|\|None\|Vigan.02G051200.01), UPSTREAM(\|2806\|\|None\|Vigan.02G051300.01)	Vigna nepalensis
3853164	G	C	68	3046.77	1.00	INTRON(\|\|\|None\|Vigan.02G051200.01), UPSTREAM(\|2627\|\|None\|Vigan.02G051300.01)	Vigna nepalensis
3853171	C	T	73	3171.77	1.00	INTRON(\|\|\|None\|Vigan.02G051200.01), UPSTREAM(\|2620\|\|None\|Vigan.02G051300.01)	Vigna nepalensis
3853770	A	T	46	2073.77	1.00	INTRON(\|\|\|None\|Vigan.02G051200.01), UPSTREAM(\|2021\|\|None\|Vigan.02G051300.01)	Vigna nepalensis
3853777	C	T	48	2144.77	1.00	INTRON(\|\|\|None\|Vigan.02G051200.01), UPSTREAM(\|2014\|\|None\|Vigan.02G051300.01)	Vigna nepalensis
3854586	A	G	42	1619.77	1.00	DOWNSTREAM(\|4560\|\|None\|Vigan.02G051400.01), UPSTREAM(\|1205\|\|None\|Vigan.02G051300.01), UTR_3_PRIME(\|192\|\|None\|Vigan.02G051200.01)	Vigna nepalensis
3854612	G	A	48	1842.77	1.00	DOWNSTREAM(\|4534\|\|None\|Vigan.02G051400.01), UPSTREAM(\|1179\|\|None\|Vigan.02G051300.01), UTR_3_PRIME(\|218\|\|None\|Vigan.02G051200.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
3852431	T	TCTGGAAA	57	2748.73	1.00	DOWNSTREAM(\|4347\|\|None\|Vigan.02G051100.01), INTRON(\|\|\|None\|Vigan.02G051200.01), UPSTREAM(\|3359\|\|None\|Vigan.02G051300.01)	Vigna nepalensis