VIGGS:Variant information

Chr02:36599350 - 36605445

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[SNPs] [Indels]

SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
36600201	C	T	66	2629.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|Gtc/Atc\|V256I\|None\|Vigan.02G260600.01), SPLICE_SITE_REGION(\|\|\|None\|Vigan.02G260600.01), UPSTREAM(\|1391\|\|None\|Vigan.02G260500.01)	Vigna nepalensis
36600390	A	C	55	2172.77	1.00	INTRON(\|\|\|None\|Vigan.02G260600.01), UPSTREAM(\|1580\|\|None\|Vigan.02G260500.01)	Vigna nepalensis
36600590	A	C	54	2234.77	1.00	INTRON(\|\|\|None\|Vigan.02G260600.01), UPSTREAM(\|1780\|\|None\|Vigan.02G260500.01)	Vigna nepalensis
36600824	C	G	41	1815.77	1.00	INTRON(\|\|\|None\|Vigan.02G260600.01), UPSTREAM(\|2014\|\|None\|Vigan.02G260500.01)	Vigna nepalensis
36600845	C	A	44	1920.77	1.00	INTRON(\|\|\|None\|Vigan.02G260600.01), UPSTREAM(\|2035\|\|None\|Vigan.02G260500.01)	Vigna nepalensis
36601082	A	C	57	2358.77	1.00	INTRON(\|\|\|None\|Vigan.02G260600.01), UPSTREAM(\|2272\|\|None\|Vigan.02G260500.01)	Vigna nepalensis
36601431	T	A	62	2367.77	1.00	INTRON(\|\|\|None\|Vigan.02G260600.01), UPSTREAM(\|2621\|\|None\|Vigan.02G260500.01)	Vigna nepalensis
36601847	C	G	53	2235.77	1.00	INTRON(\|\|\|None\|Vigan.02G260600.01), UPSTREAM(\|3037\|\|None\|Vigan.02G260500.01)	Vigna nepalensis
36601950	G	A	64	2660.77	1.00	INTRON(\|\|\|None\|Vigan.02G260600.01), UPSTREAM(\|3140\|\|None\|Vigan.02G260500.01)	Vigna nepalensis
36602192	T	A	60	2442.77	1.00	INTRON(\|\|\|None\|Vigan.02G260600.01), UPSTREAM(\|3382\|\|None\|Vigan.02G260500.01)	Vigna nepalensis
36602723	A	T	55	2179.77	1.00	INTRON(\|\|\|None\|Vigan.02G260600.01), UPSTREAM(\|3913\|\|None\|Vigan.02G260500.01)	Vigna nepalensis
36602872	G	A	45	1854.77	1.00	INTRON(\|\|\|None\|Vigan.02G260600.01), UPSTREAM(\|4062\|\|None\|Vigan.02G260500.01)	Vigna nepalensis
36602992	A	G	52	2057.77	1.00	SYNONYMOUS_CODING(SILENT\|Tta/Cta\|L151\|None\|Vigan.02G260600.01), UPSTREAM(\|4182\|\|None\|Vigan.02G260500.01)	Vigna nepalensis
36604446	C	A	63	2454.77	1.00	INTRON(\|\|\|None\|Vigan.02G260600.01)	Vigna nepalensis
36605047	G	C	57	2203.77	1.00	INTRON(\|\|\|None\|Vigan.02G260600.01), SPLICE_SITE_REGION(\|\|\|None\|Vigan.02G260600.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
36599533	A	ACT	55	2431.73	1.00	UPSTREAM(\|724\|\|None\|Vigan.02G260500.01), UTR_3_PRIME(\|467\|\|None\|Vigan.02G260600.01)	Vigna nepalensis
36600467	AAGGGAG	A	50	2180.73	1.00	INTRON(\|\|\|None\|Vigan.02G260600.01), UPSTREAM(\|1658\|\|None\|Vigan.02G260500.01)	Vigna nepalensis
36601825	A	AAC	54	2209.73	1.00	INTRON(\|\|\|None\|Vigan.02G260600.01), UPSTREAM(\|3016\|\|None\|Vigan.02G260500.01)	Vigna nepalensis
36601959	C	CAA	66	2895.73	1.00	INTRON(\|\|\|None\|Vigan.02G260600.01), UPSTREAM(\|3150\|\|None\|Vigan.02G260500.01)	Vigna nepalensis
36602305	CAT	C	32	1447.73	1.00	INTRON(\|\|\|None\|Vigan.02G260600.01), UPSTREAM(\|3496\|\|None\|Vigan.02G260500.01)	Vigna nepalensis
36602311	CATACATATACATACATACATACATATATATATATATATATATAT	C	33	1447.73	1.00	INTRON(\|\|\|None\|Vigan.02G260600.01), UPSTREAM(\|3502\|\|None\|Vigan.02G260500.01)	Vigna nepalensis
36602789	GA	G	48	1614.73	1.00	INTRON(\|\|\|None\|Vigan.02G260600.01), UPSTREAM(\|3980\|\|None\|Vigan.02G260500.01)	Vigna nepalensis
36603485	A	ATCT	48	2204.73	1.00	INTRON(\|\|\|None\|Vigan.02G260600.01), UPSTREAM(\|4676\|\|None\|Vigan.02G260500.01)	Vigna nepalensis
36604300	TAA	T	42	1662.73	1.00	INTRON(\|\|\|None\|Vigan.02G260600.01), SPLICE_SITE_REGION(\|\|\|None\|Vigan.02G260600.01)	Vigna nepalensis