Variant information

Chr02:3266949 - 3271443

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 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
3267083AT461782.771.00START_GAINED(|||None|Vigan.02G044800.01), UPSTREAM(|4565||None|Vigan.02G044700.01), UTR_5_PRIME(|42||None|Vigan.02G044800.01)Vigna nepalensis
3267551TC683067.771.00INTRON(|||None|Vigan.02G044800.01)Vigna nepalensis
3267564AG743250.771.00INTRON(|||None|Vigan.02G044800.01)Vigna nepalensis
3267761TG451848.771.00INTRON(|||None|Vigan.02G044800.01)Vigna nepalensis
3267786TG441796.771.00INTRON(|||None|Vigan.02G044800.01)Vigna nepalensis
3268097GA441949.771.00INTRON(|||None|Vigan.02G044800.01)Vigna nepalensis
3268148CT381535.771.00INTRON(|||None|Vigan.02G044800.01)Vigna nepalensis
3268395TC431740.771.00INTRON(|||None|Vigan.02G044800.01)Vigna nepalensis
3268943GC481987.771.00INTRON(|||None|Vigan.02G044800.01)Vigna nepalensis
3269017AC421787.771.00INTRON(|||None|Vigan.02G044800.01)Vigna nepalensis
3269063TA451794.771.00INTRON(|||None|Vigan.02G044800.01)Vigna nepalensis
3269181AC501937.771.00INTRON(|||None|Vigan.02G044800.01)Vigna nepalensis
3269526TA472086.771.00INTRON(|||None|Vigan.02G044800.01)Vigna nepalensis
3269530TA472086.771.00INTRON(|||None|Vigan.02G044800.01)Vigna nepalensis
3270166TC391609.771.00INTRON(|||None|Vigan.02G044800.01)Vigna nepalensis
3270705TC682561.771.00INTRON(|||None|Vigan.02G044800.01)Vigna nepalensis
3270777GA582393.771.00INTRON(|||None|Vigan.02G044800.01)Vigna nepalensis
3270837TC441733.771.00INTRON(|||None|Vigan.02G044800.01)Vigna nepalensis
3271081CG602365.771.00SYNONYMOUS_CODING(SILENT|ctC/ctG|L199|None|Vigan.02G044800.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
3268102CATAAC451957.731.00INTRON(|||None|Vigan.02G044800.01)Vigna nepalensis
3269331TTCA502030.731.00INTRON(|||None|Vigan.02G044800.01)Vigna nepalensis
3270418TAT431568.731.00INTRON(|||None|Vigan.02G044800.01)Vigna nepalensis
3270889GGC381496.731.00INTRON(|||None|Vigan.02G044800.01)Vigna nepalensis
3271176CCTTTTTT281345.731.00UTR_3_PRIME(|63||None|Vigan.02G044800.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
3268291(AT)11(AT)5522278.731.00INTRON(|||None|Vigan.02G044800.01)Vigna nepalensis