Variant information

Chr02:2709830 - 2717591

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
2710071CG532069.771.00INTRON(|||None|Vigan.02G036700.01), UPSTREAM(|667||None|Vigan.02G036600.01)Vigna nepalensis
2710690AT562465.771.00INTRON(|||None|Vigan.02G036700.01), UPSTREAM(|1286||None|Vigan.02G036600.01)Vigna nepalensis
2712108TC401559.771.00INTRON(|||None|Vigan.02G036700.01), SPLICE_SITE_REGION(|||None|Vigan.02G036700.01), UPSTREAM(|2704||None|Vigan.02G036600.01)Vigna nepalensis
2712229TG411623.771.00INTRON(|||None|Vigan.02G036700.01), UPSTREAM(|2825||None|Vigan.02G036600.01)Vigna nepalensis
2712275TC391533.771.00INTRON(|||None|Vigan.02G036700.01), UPSTREAM(|2871||None|Vigan.02G036600.01)Vigna nepalensis
2713130AT532062.771.00INTRON(|||None|Vigan.02G036700.01), UPSTREAM(|3726||None|Vigan.02G036600.01)Vigna nepalensis
2713178TC602210.771.00INTRON(|||None|Vigan.02G036700.01), SPLICE_SITE_REGION(|||None|Vigan.02G036700.01), UPSTREAM(|3774||None|Vigan.02G036600.01)Vigna nepalensis
2713948CT441852.771.00INTRON(|||None|Vigan.02G036700.01), UPSTREAM(|4544||None|Vigan.02G036600.01)Vigna nepalensis
2714347AC622486.771.00INTRON(|||None|Vigan.02G036700.01), UPSTREAM(|4943||None|Vigan.02G036600.01)Vigna nepalensis
2715095AT481979.771.00INTRON(|||None|Vigan.02G036700.01), UPSTREAM(|4288||None|Vigan.02G036800.01)Vigna nepalensis
2717104TC602675.771.00NON_SYNONYMOUS_CODING(MISSENSE|tTa/tCa|L555S|None|Vigan.02G036700.01), UPSTREAM(|2279||None|Vigan.02G036800.01)Vigna nepalensis
2717108CT572606.771.00SYNONYMOUS_CODING(SILENT|gaC/gaT|D556|None|Vigan.02G036700.01), UPSTREAM(|2275||None|Vigan.02G036800.01)Vigna nepalensis
2717303AG582273.770.98UPSTREAM(|2080||None|Vigan.02G036800.01), UTR_3_PRIME(|156||None|Vigan.02G036700.01)Vigna nepalensis
2717389GT512292.771.00UPSTREAM(|1994||None|Vigan.02G036800.01), UTR_3_PRIME(|242||None|Vigan.02G036700.01)Vigna nepalensis
2717393CA522395.771.00UPSTREAM(|1990||None|Vigan.02G036800.01), UTR_3_PRIME(|246||None|Vigan.02G036700.01)Vigna nepalensis
2717405AC492194.771.00UPSTREAM(|1978||None|Vigan.02G036800.01), UTR_3_PRIME(|258||None|Vigan.02G036700.01)Vigna nepalensis
2717522AC471933.771.00UPSTREAM(|1861||None|Vigan.02G036800.01), UTR_3_PRIME(|375||None|Vigan.02G036700.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
2709863GGC512042.731.00UPSTREAM(|460||None|Vigan.02G036600.01), UTR_5_PRIME(|136||None|Vigan.02G036700.01)Vigna nepalensis
2709964AAT592147.731.00UPSTREAM(|561||None|Vigan.02G036600.01), UTR_5_PRIME(|35||None|Vigan.02G036700.01)Vigna nepalensis
2710698AAAAGTATCGACTGTCGACCAATA542423.731.00INTRON(|||None|Vigan.02G036700.01), UPSTREAM(|1295||None|Vigan.02G036600.01)Vigna nepalensis
2712398GGT17513.730.82INTRON(|||None|Vigan.02G036700.01), UPSTREAM(|2995||None|Vigan.02G036600.01)Vigna nepalensis
2712399GGATAGGTTTCTTGTTAAAGAAATCCTATCTCT16510.730.81INTRON(|||None|Vigan.02G036700.01), UPSTREAM(|2996||None|Vigan.02G036600.01)Vigna nepalensis
2712403TTC10109.730.40INTRON(|||None|Vigan.02G036700.01), UPSTREAM(|3000||None|Vigan.02G036600.01)Vigna nepalensis
2712405AACCACTCT11108.730.36INTRON(|||None|Vigan.02G036700.01), UPSTREAM(|3002||None|Vigan.02G036600.01)Vigna nepalensis
2713506ATA551603.731.00INTRON(|||None|Vigan.02G036700.01), UPSTREAM(|4103||None|Vigan.02G036600.01)Vigna nepalensis
2717387CCTT472238.731.00UPSTREAM(|1995||None|Vigan.02G036800.01), UTR_3_PRIME(|241||None|Vigan.02G036700.01)Vigna nepalensis