VIGGS:Variant information

Chr02:248031 - 249585

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
248132	C	T	43	1938.77	1.00	UTR_3_PRIME(\|12\|\|None\|Vigan.02G003000.01)	Vigna nepalensis
248135	C	G	45	1974.77	1.00	UTR_3_PRIME(\|9\|\|None\|Vigan.02G003000.01)	Vigna nepalensis
248314	C	G	34	1481.77	1.00	INTRON(\|\|\|None\|Vigan.02G003000.01)	Vigna nepalensis
248321	C	T	34	1514.77	1.00	INTRON(\|\|\|None\|Vigan.02G003000.01)	Vigna nepalensis
248470	T	C	46	1790.77	1.00	SYNONYMOUS_CODING(SILENT\|ttA/ttG\|L197\|None\|Vigan.02G003000.01)	Vigna nepalensis
248958	A	G	44	1721.77	1.00	DOWNSTREAM(\|4621\|\|None\|Vigan.02G003100.01), INTRON(\|\|\|None\|Vigan.02G003000.01)	Vigna nepalensis
249433	A	G	35	1464.77	1.00	DOWNSTREAM(\|4146\|\|None\|Vigan.02G003100.01), UTR_5_PRIME(\|185\|\|None\|Vigan.02G003000.01)	Vigna nepalensis

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
249255	TG	T	38	1766.73	1.00	DOWNSTREAM(\|4323\|\|None\|Vigan.02G003100.01), UTR_5_PRIME(\|8\|\|None\|Vigan.02G003000.01)	Vigna nepalensis
249258	TCTGTGTGA	T	41	1692.73	1.00	DOWNSTREAM(\|4320\|\|None\|Vigan.02G003100.01), UTR_5_PRIME(\|11\|\|None\|Vigan.02G003000.01)	Vigna nepalensis

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
249584	(TC)10	(TC)11	29	969.73	0.97	DOWNSTREAM(\|3994\|\|None\|Vigan.02G003100.01), UTR_5_PRIME(\|337\|\|None\|Vigan.02G003000.01)	Vigna nepalensis