Variant information

Chr02:248031 - 249585

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 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
248132CT431938.771.00UTR_3_PRIME(|12||None|Vigan.02G003000.01)Vigna nepalensis
248135CG451974.771.00UTR_3_PRIME(|9||None|Vigan.02G003000.01)Vigna nepalensis
248314CG341481.771.00INTRON(|||None|Vigan.02G003000.01)Vigna nepalensis
248321CT341514.771.00INTRON(|||None|Vigan.02G003000.01)Vigna nepalensis
248470TC461790.771.00SYNONYMOUS_CODING(SILENT|ttA/ttG|L197|None|Vigan.02G003000.01)Vigna nepalensis
248958AG441721.771.00DOWNSTREAM(|4621||None|Vigan.02G003100.01), INTRON(|||None|Vigan.02G003000.01)Vigna nepalensis
249433AG351464.771.00DOWNSTREAM(|4146||None|Vigan.02G003100.01), UTR_5_PRIME(|185||None|Vigan.02G003000.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
249255TGT381766.731.00DOWNSTREAM(|4323||None|Vigan.02G003100.01), UTR_5_PRIME(|8||None|Vigan.02G003000.01)Vigna nepalensis
249258TCTGTGTGAT411692.731.00DOWNSTREAM(|4320||None|Vigan.02G003100.01), UTR_5_PRIME(|11||None|Vigan.02G003000.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
249584(TC)10(TC)1129969.730.97DOWNSTREAM(|3994||None|Vigan.02G003100.01), UTR_5_PRIME(|337||None|Vigan.02G003000.01)Vigna nepalensis