VIGGS:Variant information

Chr02:15793196 - 15795976

Filter

[SNPs] [Indels]

SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
15793238	T	C	45	1830.77	1.00	UTR_3_PRIME(\|2537\|\|None\|Vigan.02G163100.01), UTR_5_PRIME(\|222\|\|None\|Vigan.02G163000.01)	Vigna nepalensis
15793323	T	A	70	2667.77	1.00	UTR_3_PRIME(\|2452\|\|None\|Vigan.02G163100.01), UTR_5_PRIME(\|137\|\|None\|Vigan.02G163000.01)	Vigna nepalensis
15793438	G	A	61	2757.77	1.00	UTR_3_PRIME(\|2337\|\|None\|Vigan.02G163100.01), UTR_5_PRIME(\|22\|\|None\|Vigan.02G163000.01)	Vigna nepalensis
15793441	C	T	62	2847.77	1.00	START_GAINED(\|\|\|None\|Vigan.02G163000.01), UTR_3_PRIME(\|2334\|\|None\|Vigan.02G163100.01), UTR_5_PRIME(\|19\|\|None\|Vigan.02G163000.01)	Vigna nepalensis
15793442	G	C	63	2847.77	1.00	UTR_3_PRIME(\|2333\|\|None\|Vigan.02G163100.01), UTR_5_PRIME(\|18\|\|None\|Vigan.02G163000.01)	Vigna nepalensis
15793448	G	C	61	2741.77	1.00	UTR_3_PRIME(\|2327\|\|None\|Vigan.02G163100.01), UTR_5_PRIME(\|12\|\|None\|Vigan.02G163000.01)	Vigna nepalensis
15793450	A	G	62	2741.77	1.00	UTR_3_PRIME(\|2325\|\|None\|Vigan.02G163100.01), UTR_5_PRIME(\|10\|\|None\|Vigan.02G163000.01)	Vigna nepalensis
15793522	A	C	55	2080.77	1.00	SYNONYMOUS_CODING(SILENT\|ctA/ctC\|L21\|None\|Vigan.02G163000.01), UTR_3_PRIME(\|2253\|\|None\|Vigan.02G163100.01)	Vigna nepalensis
15793555	A	G	59	2298.77	1.00	SYNONYMOUS_CODING(SILENT\|tcA/tcG\|S32\|None\|Vigan.02G163000.01), UTR_3_PRIME(\|2220\|\|None\|Vigan.02G163100.01)	Vigna nepalensis
15793598	T	C	56	2403.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|Tca/Cca\|S47P\|None\|Vigan.02G163000.01), UTR_3_PRIME(\|2177\|\|None\|Vigan.02G163100.01)	Vigna nepalensis
15793692	C	T	41	1896.77	1.00	INTRON(\|\|\|None\|Vigan.02G163000.01), UTR_3_PRIME(\|2083\|\|None\|Vigan.02G163100.01)	Vigna nepalensis
15793696	T	G	42	1891.77	1.00	INTRON(\|\|\|None\|Vigan.02G163000.01), UTR_3_PRIME(\|2079\|\|None\|Vigan.02G163100.01)	Vigna nepalensis
15794503	C	T	58	2377.77	1.00	SYNONYMOUS_CODING(SILENT\|tcC/tcT\|S152\|None\|Vigan.02G163000.01), UTR_3_PRIME(\|1272\|\|None\|Vigan.02G163100.01)	Vigna nepalensis
15795220	G	A	60	2432.77	1.00	INTRON(\|\|\|None\|Vigan.02G163000.01), UTR_3_PRIME(\|555\|\|None\|Vigan.02G163100.01)	Vigna nepalensis
15795751	C	G	58	2273.77	1.00	INTRON(\|\|\|None\|Vigan.02G163100.01), UTR_3_PRIME(\|357\|\|None\|Vigan.02G163000.01)	Vigna nepalensis
15795955	T	A	50	2066.77	1.00	SYNONYMOUS_CODING(SILENT\|tcA/tcT\|S293\|None\|Vigan.02G163100.01), UTR_3_PRIME(\|561\|\|None\|Vigan.02G163000.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
15793608	AGAATATCAC	A	52	2328.73	1.00	CODON_CHANGE_PLUS_CODON_DELETION(\|cagaatatcaca/caa\|QNIT50Q\|None\|Vigan.02G163000.01), UTR_3_PRIME(\|2158\|\|None\|Vigan.02G163100.01)	Vigna nepalensis
15793687	C	CT	42	1833.73	1.00	INTRON(\|\|\|None\|Vigan.02G163000.01), UTR_3_PRIME(\|2087\|\|None\|Vigan.02G163100.01)	Vigna nepalensis
15793726	GA	G	45	1772.73	1.00	INTRON(\|\|\|None\|Vigan.02G163000.01), UTR_3_PRIME(\|2048\|\|None\|Vigan.02G163100.01)	Vigna nepalensis
15793770	C	CT	45	1270.73	1.00	INTRON(\|\|\|None\|Vigan.02G163000.01), UTR_3_PRIME(\|2004\|\|None\|Vigan.02G163100.01)	Vigna nepalensis
15793984	T	TTA	51	1958.73	1.00	INTRON(\|\|\|None\|Vigan.02G163000.01), UTR_3_PRIME(\|1790\|\|None\|Vigan.02G163100.01)	Vigna nepalensis