Variant information

Chr02:12298674 - 12307685

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
12298809AG481789.771.00UTR_5_PRIME(|101||None|Vigan.02G137400.01)Vigna nepalensis
12299384AG542361.771.00INTRON(|||None|Vigan.02G137400.01), SPLICE_SITE_REGION(|||None|Vigan.02G137400.01)Vigna nepalensis
12299396CA532466.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12299420GT572528.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12299455GC572274.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12299511AT602273.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12299596TA572245.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12299844TC652421.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12299949GA481893.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12300050AG331298.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12300127TG381681.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12300133AT401755.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12300156TC381482.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12300185GA421712.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12300494GA562208.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12300560TG592318.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12300729AT532083.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12300875AC441741.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12300956CT562125.771.00SYNONYMOUS_CODING(SILENT|atC/atT|I202|None|Vigan.02G137400.01)Vigna nepalensis
12301235GA542148.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12301270GA492179.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12301299TG391597.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12301418TC452018.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12301435GA462131.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12301451AG482311.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12301469CT512295.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12301511CA441941.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12301512CG431983.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12301520CG441986.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12301893TC552444.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12301900CT552537.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12301901TC552486.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12301906AC542401.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12301926AG542179.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12302018TG612495.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12302045AC582581.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12302090CT642603.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12302114TC662635.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12302358AG642562.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12302442CG552210.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12302790GT461927.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12303021TG552270.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12303101CG562160.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12303246AG542057.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12303452TC662838.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12303492CA702778.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12303703AT652564.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12303838TG582354.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12303908CA562209.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12303965AT441780.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12304079GA411665.771.00SYNONYMOUS_CODING(SILENT|caG/caA|Q273|None|Vigan.02G137400.01)Vigna nepalensis
12304112CA512038.771.00INTRON(|||None|Vigan.02G137400.01), SPLICE_SITE_REGION(|||None|Vigan.02G137400.01)Vigna nepalensis
12304142CA542234.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12304169GT562246.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12304275GA522116.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12304368CT511997.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12304391AC542099.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12304402TC482114.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12304405CA462079.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12304455AG381679.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12304476GA361632.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12304483CT331636.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12304494AC391771.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12304501GA401771.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12304515GA411951.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12304517CT441996.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12304522GA432086.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12304535AG472176.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12304541AG462086.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12304557GC432041.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12304579CT431906.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12304590GA421996.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12304592CT411951.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12304595GA391861.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12304599GA391816.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12304613CT431864.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12304665CT472054.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12304676TC492140.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12304731TC562396.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12304743TC542446.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12304759TC582671.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12304781TC622941.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12304791AG632851.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12304793GA632806.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12304854TA602784.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12304951TC712842.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12305002CA582624.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12305010AT542443.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12305049TC471890.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12305098AC592614.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12305165TC542201.771.00SYNONYMOUS_CODING(SILENT|gaT/gaC|D297|None|Vigan.02G137400.01)Vigna nepalensis
12305243CT582586.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12305314CT602333.771.00SYNONYMOUS_CODING(SILENT|aaC/aaT|N314|None|Vigan.02G137400.01)Vigna nepalensis
12305428CT602363.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12305449CT672667.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12305571TG672653.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12305639AC672733.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12305657GA702885.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12305769TG592626.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12305771CT592626.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12305805AG672714.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12305836GA672761.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12305967CT562192.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12305998CT542409.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12306008TG532438.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12306050GA491836.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12306077TG401702.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12306098GT441996.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12306143CT612688.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12306257CA442014.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12306267GT451996.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12306279CT411839.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12306487AT441734.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12306536AT582538.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12306555TG562570.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12306557GA572536.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12306576GA502288.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12306631CG511893.771.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12306706TC512187.771.00DOWNSTREAM(|4955||None|Vigan.02G137500.01), INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12306730AC502356.771.00DOWNSTREAM(|4931||None|Vigan.02G137500.01), INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12306731TA502400.771.00DOWNSTREAM(|4930||None|Vigan.02G137500.01), INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12306743CG492248.771.00DOWNSTREAM(|4918||None|Vigan.02G137500.01), INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12307119CG461881.771.00DOWNSTREAM(|4542||None|Vigan.02G137500.01), SYNONYMOUS_CODING(SILENT|ctC/ctG|L374|None|Vigan.02G137400.01)Vigna nepalensis
12307182TC351546.771.00DOWNSTREAM(|4479||None|Vigan.02G137500.01), SYNONYMOUS_CODING(SILENT|gcT/gcC|A395|None|Vigan.02G137400.01)Vigna nepalensis
12307189CA401718.771.00DOWNSTREAM(|4472||None|Vigan.02G137500.01), NON_SYNONYMOUS_CODING(MISSENSE|Ctc/Atc|L398I|None|Vigan.02G137400.01)Vigna nepalensis
12307365CA542165.771.00DOWNSTREAM(|4296||None|Vigan.02G137500.01), UTR_3_PRIME(|120||None|Vigan.02G137400.01)Vigna nepalensis
12307564CT331447.771.00DOWNSTREAM(|4097||None|Vigan.02G137500.01), UTR_3_PRIME(|319||None|Vigan.02G137400.01)Vigna nepalensis
12307565TG321447.771.00DOWNSTREAM(|4096||None|Vigan.02G137500.01), UTR_3_PRIME(|320||None|Vigan.02G137400.01)Vigna nepalensis
12307574GA311366.771.00DOWNSTREAM(|4087||None|Vigan.02G137500.01), UTR_3_PRIME(|329||None|Vigan.02G137400.01)Vigna nepalensis
12307680TC13556.771.00DOWNSTREAM(|3981||None|Vigan.02G137500.01), UTR_3_PRIME(|435||None|Vigan.02G137400.01)Vigna nepalensis
12307682TC12556.771.00DOWNSTREAM(|3979||None|Vigan.02G137500.01), UTR_3_PRIME(|437||None|Vigan.02G137400.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
12299880GGT672084.731.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12300375CAC491640.731.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12300920CCA451566.731.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12301265CCAT462097.731.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12301444CTC452032.731.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12301447GGA462212.731.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12301465TTCA452077.731.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12301475GATG532369.731.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12301581CCT441918.731.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12301591ATA471980.731.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12301834CTC552014.731.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12301873ATA481645.731.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12301976ATA491497.731.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12302043TTC582572.731.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12302495CCTT552466.731.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12302824CCTA562562.731.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12303439AAATAT562647.731.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12303553ATATCA642828.731.00INTRON(|||None|Vigan.02G137400.01), SPLICE_SITE_REGION(|||None|Vigan.02G137400.01)Vigna nepalensis
12303742ATTA672987.731.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12303746GTTTCATTG682987.731.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12303880AATCA542363.731.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12304698CCAT491898.731.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12304846TCT521393.730.96INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12304868CAC672917.731.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12305092CCA542482.731.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12305235TCT562575.731.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12305902ATA511862.731.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12306012CTCTCCAGTGAC522347.731.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12306104TATTTAT451977.731.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12306159TAT602568.731.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12306377AGA441667.731.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12306423GGT271320.731.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12306445AAC361518.731.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12306603TTG562196.731.00INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12306803AAACG642891.731.00DOWNSTREAM(|4857||None|Vigan.02G137500.01), INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12307037AATCT512246.731.00DOWNSTREAM(|4623||None|Vigan.02G137500.01), INTRON(|||None|Vigan.02G137400.01)Vigna nepalensis
12307627GAG351436.731.00DOWNSTREAM(|4033||None|Vigan.02G137500.01), UTR_3_PRIME(|383||None|Vigan.02G137400.01)Vigna nepalensis
12307649TTGT301326.731.00DOWNSTREAM(|4011||None|Vigan.02G137500.01), UTR_3_PRIME(|405||None|Vigan.02G137400.01)Vigna nepalensis
12307653CCCT281267.731.00DOWNSTREAM(|4007||None|Vigan.02G137500.01), UTR_3_PRIME(|409||None|Vigan.02G137400.01)Vigna nepalensis
12307656CCAC271177.731.00DOWNSTREAM(|4004||None|Vigan.02G137500.01), UTR_3_PRIME(|412||None|Vigan.02G137400.01)Vigna nepalensis
12307660CCT251132.731.00DOWNSTREAM(|4000||None|Vigan.02G137500.01), UTR_3_PRIME(|416||None|Vigan.02G137400.01)Vigna nepalensis
12307668TTCCTCGATCCCATACCTATTTAA221312.731.00DOWNSTREAM(|3992||None|Vigan.02G137500.01), UTR_3_PRIME(|424||None|Vigan.02G137400.01)Vigna nepalensis
12307671TTTTCAACAAAATGGATGTCAATATC211042.731.00DOWNSTREAM(|3989||None|Vigan.02G137500.01), UTR_3_PRIME(|427||None|Vigan.02G137400.01)Vigna nepalensis