VIGGS:Variant information

Chr02:10040141 - 10042837

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
10040808	T	A	58	2383.77	1.00	DOWNSTREAM(\|3718\|\|None\|Vigan.02G118400.01), SYNONYMOUS_CODING(SILENT\|acA/acT\|T214\|None\|Vigan.02G118500.01)	Vigna nepalensis
10041539	G	A	53	2068.77	1.00	DOWNSTREAM(\|4449\|\|None\|Vigan.02G118400.01), INTRON(\|\|\|None\|Vigan.02G118500.01)	Vigna nepalensis
10041757	T	C	43	1588.77	1.00	DOWNSTREAM(\|4667\|\|None\|Vigan.02G118400.01), INTRON(\|\|\|None\|Vigan.02G118500.01)	Vigna nepalensis
10042554	T	C	40	1505.77	1.00	UTR_5_PRIME(\|209\|\|None\|Vigan.02G118500.01)	Vigna nepalensis
10042734	A	C	51	2176.77	1.00	UTR_5_PRIME(\|389\|\|None\|Vigan.02G118500.01)	Vigna nepalensis

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
10041560	G	GA	60	1705.73	1.00	DOWNSTREAM(\|4471\|\|None\|Vigan.02G118400.01), INTRON(\|\|\|None\|Vigan.02G118500.01)	Vigna nepalensis
10041822	T	TAA	40	1533.73	0.97	DOWNSTREAM(\|4733\|\|None\|Vigan.02G118400.01), INTRON(\|\|\|None\|Vigan.02G118500.01)	Vigna nepalensis
10042630	G	GA	40	1328.73	1.00	UTR_5_PRIME(\|286\|\|None\|Vigan.02G118500.01)	Vigna nepalensis

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
10042706	(CT)11	(CT)9	41	1791.73	1.00	UTR_5_PRIME(\|362\|\|None\|Vigan.02G118500.01)	Vigna nepalensis