Variant information

Chr01:9573246 - 9575660

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
9573318CT552282.771.00UTR_5_PRIME(|756||None|Vigan.01G108100.01)Vigna nepalensis
9573717TA381498.771.00UTR_5_PRIME(|357||None|Vigan.01G108100.01)Vigna nepalensis
9573775GA68657.770.26UTR_5_PRIME(|299||None|Vigan.01G108100.01)Vigna nepalensis
9573780GT70789.770.33START_GAINED(|||None|Vigan.01G108100.01), UTR_5_PRIME(|294||None|Vigan.01G108100.01)Vigna nepalensis
9573801GA761173.770.41UTR_5_PRIME(|273||None|Vigan.01G108100.01)Vigna nepalensis
9573803CT781176.770.41UTR_5_PRIME(|271||None|Vigan.01G108100.01)Vigna nepalensis
9573887GA942016.770.52UTR_5_PRIME(|187||None|Vigan.01G108100.01)Vigna nepalensis
9573889AG982016.770.53UTR_5_PRIME(|185||None|Vigan.01G108100.01)Vigna nepalensis
9573892TC962213.770.54START_GAINED(|||None|Vigan.01G108100.01), UTR_5_PRIME(|182||None|Vigan.01G108100.01)Vigna nepalensis
9573941GA981604.770.50UTR_5_PRIME(|133||None|Vigan.01G108100.01)Vigna nepalensis
9573955CT971916.770.49UTR_5_PRIME(|119||None|Vigan.01G108100.01)Vigna nepalensis
9573962GA941870.770.50UTR_5_PRIME(|112||None|Vigan.01G108100.01)Vigna nepalensis
9573969AT931716.770.48UTR_5_PRIME(|105||None|Vigan.01G108100.01)Vigna nepalensis
9573973GA941750.770.48UTR_5_PRIME(|101||None|Vigan.01G108100.01)Vigna nepalensis
9573990GT881302.770.47UTR_5_PRIME(|84||None|Vigan.01G108100.01)Vigna nepalensis
9574007GT741311.770.47START_GAINED(|||None|Vigan.01G108100.01), UTR_5_PRIME(|67||None|Vigan.01G108100.01)Vigna nepalensis
9574013GA741306.770.46UTR_5_PRIME(|61||None|Vigan.01G108100.01)Vigna nepalensis
9574041GT631176.770.49START_GAINED(|||None|Vigan.01G108100.01), UTR_5_PRIME(|33||None|Vigan.01G108100.01)Vigna nepalensis
9574043GT621176.770.50UTR_5_PRIME(|31||None|Vigan.01G108100.01)Vigna nepalensis
9574328GC532097.771.00INTRON(|||None|Vigan.01G108100.01)Vigna nepalensis
9574900GC522277.771.00NON_SYNONYMOUS_CODING(MISSENSE|gGa/gCa|G234A|None|Vigan.01G108100.01)Vigna nepalensis
9574904TC502243.771.00SYNONYMOUS_CODING(SILENT|gaT/gaC|D235|None|Vigan.01G108100.01)Vigna nepalensis
9575249GT612313.771.00SYNONYMOUS_CODING(SILENT|ggG/ggT|G350|None|Vigan.01G108100.01)Vigna nepalensis
9575356CA572548.771.00NON_SYNONYMOUS_CODING(MISSENSE|gCa/gAa|A386E|None|Vigan.01G108100.01)Vigna nepalensis
9575362CA582561.771.00NON_SYNONYMOUS_CODING(MISSENSE|aCt/aAt|T388N|None|Vigan.01G108100.01)Vigna nepalensis
9575381GA542113.771.00SYNONYMOUS_CODING(SILENT|ggG/ggA|G394|None|Vigan.01G108100.01)Vigna nepalensis
9575565GT451836.771.00UTR_3_PRIME(|157||None|Vigan.01G108100.01)Vigna nepalensis
9575618GA522060.771.00UTR_3_PRIME(|210||None|Vigan.01G108100.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
9573816CCTTTGGCAAATGGGGC921254.730.38UTR_5_PRIME(|243||None|Vigan.01G108100.01)Vigna nepalensis
9574191TTTTTATCATCAGAAACATTTC65258.730.17FRAME_SHIFT(|ttc/tTTTATCATCAGAAACATTTCtc|F40FYHQKHF?|None|Vigan.01G108100.01)Vigna nepalensis
9574343CTTC562432.731.00INTRON(|||None|Vigan.01G108100.01)Vigna nepalensis