Variant information

Chr01:834909 - 838105

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 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
834917TA471928.771.00DOWNSTREAM(|4585||None|Vigan.01G013900.01), UPSTREAM(|1925||None|Vigan.01G013700.01), UTR_3_PRIME(|890||None|Vigan.01G013800.01)Vigna nepalensis
835358AG451790.771.00DOWNSTREAM(|4144||None|Vigan.01G013900.01), UPSTREAM(|2366||None|Vigan.01G013700.01), UTR_3_PRIME(|449||None|Vigan.01G013800.01)Vigna nepalensis
835504TG632563.771.00DOWNSTREAM(|3998||None|Vigan.01G013900.01), UPSTREAM(|2512||None|Vigan.01G013700.01), UTR_3_PRIME(|303||None|Vigan.01G013800.01)Vigna nepalensis
835631TA501879.771.00DOWNSTREAM(|3871||None|Vigan.01G013900.01), UPSTREAM(|2639||None|Vigan.01G013700.01), UTR_3_PRIME(|176||None|Vigan.01G013800.01)Vigna nepalensis
836017GC512111.771.00DOWNSTREAM(|3485||None|Vigan.01G013900.01), SYNONYMOUS_CODING(SILENT|ccC/ccG|P295|None|Vigan.01G013800.01), UPSTREAM(|3025||None|Vigan.01G013700.01)Vigna nepalensis
836501TC341404.771.00DOWNSTREAM(|3001||None|Vigan.01G013900.01), NON_SYNONYMOUS_CODING(MISSENSE|cAt/cGt|H134R|None|Vigan.01G013800.01), UPSTREAM(|3509||None|Vigan.01G013700.01)Vigna nepalensis
836748GT522455.771.00DOWNSTREAM(|2754||None|Vigan.01G013900.01), INTRON(|||None|Vigan.01G013800.01), UPSTREAM(|3756||None|Vigan.01G013700.01)Vigna nepalensis
836764TA481972.771.00DOWNSTREAM(|2738||None|Vigan.01G013900.01), INTRON(|||None|Vigan.01G013800.01), UPSTREAM(|3772||None|Vigan.01G013700.01)Vigna nepalensis
836894CT522133.771.00DOWNSTREAM(|2608||None|Vigan.01G013900.01), INTRON(|||None|Vigan.01G013800.01), UPSTREAM(|3902||None|Vigan.01G013700.01)Vigna nepalensis
837252GA542246.771.00DOWNSTREAM(|2250||None|Vigan.01G013900.01), INTRON(|||None|Vigan.01G013800.01), UPSTREAM(|4260||None|Vigan.01G013700.01)Vigna nepalensis
837366AC461802.771.00DOWNSTREAM(|2136||None|Vigan.01G013900.01), INTRON(|||None|Vigan.01G013800.01), UPSTREAM(|4374||None|Vigan.01G013700.01)Vigna nepalensis
837506GA612221.771.00DOWNSTREAM(|1996||None|Vigan.01G013900.01), INTRON(|||None|Vigan.01G013800.01), UPSTREAM(|4514||None|Vigan.01G013700.01)Vigna nepalensis
837570GT562198.771.00DOWNSTREAM(|1932||None|Vigan.01G013900.01), INTRON(|||None|Vigan.01G013800.01), UPSTREAM(|4578||None|Vigan.01G013700.01)Vigna nepalensis
837766GA491913.771.00DOWNSTREAM(|1736||None|Vigan.01G013900.01), SYNONYMOUS_CODING(SILENT|aaC/aaT|N64|None|Vigan.01G013800.01), UPSTREAM(|4774||None|Vigan.01G013700.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
835309TTTA482018.731.00DOWNSTREAM(|4192||None|Vigan.01G013900.01), UPSTREAM(|2318||None|Vigan.01G013700.01), UTR_3_PRIME(|497||None|Vigan.01G013800.01)Vigna nepalensis
836742CATC562446.731.00DOWNSTREAM(|2759||None|Vigan.01G013900.01), INTRON(|||None|Vigan.01G013800.01), UPSTREAM(|3751||None|Vigan.01G013700.01)Vigna nepalensis
836875AAC522125.731.00DOWNSTREAM(|2626||None|Vigan.01G013900.01), INTRON(|||None|Vigan.01G013800.01), UPSTREAM(|3884||None|Vigan.01G013700.01)Vigna nepalensis
837326AAACGAACAGT432031.731.00DOWNSTREAM(|2175||None|Vigan.01G013900.01), INTRON(|||None|Vigan.01G013800.01), UPSTREAM(|4335||None|Vigan.01G013700.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
835517(AC)9(AC)8531908.731.00DOWNSTREAM(|3984||None|Vigan.01G013900.01), UPSTREAM(|2526||None|Vigan.01G013700.01), UTR_3_PRIME(|288||None|Vigan.01G013800.01)Vigna nepalensis