VIGGS:Variant information

Chr01:64091560 - 64093944

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[SNPs] [Indels]

SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
64091576	T	A	43	1996.77	1.00	UPSTREAM(\|2534\|\|None\|Vigan.01G514200.01), UTR_5_PRIME(\|208\|\|None\|Vigan.01G514300.01)	Vigna nepalensis
64091579	T	A	45	1969.77	1.00	UPSTREAM(\|2537\|\|None\|Vigan.01G514200.01), UTR_5_PRIME(\|205\|\|None\|Vigan.01G514300.01)	Vigna nepalensis
64091613	C	A	52	2307.77	1.00	UPSTREAM(\|2571\|\|None\|Vigan.01G514200.01), UTR_5_PRIME(\|171\|\|None\|Vigan.01G514300.01)	Vigna nepalensis
64092075	C	A	48	1951.77	1.00	INTRON(\|\|\|None\|Vigan.01G514300.01), UPSTREAM(\|3033\|\|None\|Vigan.01G514200.01)	Vigna nepalensis
64092113	G	A	53	2082.77	1.00	INTRON(\|\|\|None\|Vigan.01G514300.01), UPSTREAM(\|3071\|\|None\|Vigan.01G514200.01)	Vigna nepalensis
64092129	T	A	53	2109.77	1.00	INTRON(\|\|\|None\|Vigan.01G514300.01), UPSTREAM(\|3087\|\|None\|Vigan.01G514200.01)	Vigna nepalensis
64092577	T	G	61	2696.77	1.00	INTRON(\|\|\|None\|Vigan.01G514300.01), UPSTREAM(\|3535\|\|None\|Vigan.01G514200.01)	Vigna nepalensis
64092670	C	T	42	1692.77	1.00	INTRON(\|\|\|None\|Vigan.01G514300.01), UPSTREAM(\|3628\|\|None\|Vigan.01G514200.01)	Vigna nepalensis
64092727	G	T	54	2129.77	1.00	INTRON(\|\|\|None\|Vigan.01G514300.01), UPSTREAM(\|3685\|\|None\|Vigan.01G514200.01)	Vigna nepalensis
64092934	T	C	52	2084.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|gTc/gCc\|V193A\|None\|Vigan.01G514300.01), UPSTREAM(\|3892\|\|None\|Vigan.01G514200.01)	Vigna nepalensis
64093229	T	A	61	2393.77	1.00	UPSTREAM(\|4187\|\|None\|Vigan.01G514200.01), UTR_3_PRIME(\|180\|\|None\|Vigan.01G514300.01)	Vigna nepalensis
64093472	G	A	80	3254.77	1.00	UPSTREAM(\|4430\|\|None\|Vigan.01G514200.01), UTR_3_PRIME(\|423\|\|None\|Vigan.01G514300.01)	Vigna nepalensis
64093569	A	G	58	2313.77	1.00	UPSTREAM(\|4527\|\|None\|Vigan.01G514200.01), UTR_3_PRIME(\|520\|\|None\|Vigan.01G514300.01)	Vigna nepalensis
64093910	C	T	60	2285.77	1.00	UPSTREAM(\|4868\|\|None\|Vigan.01G514200.01), UTR_3_PRIME(\|861\|\|None\|Vigan.01G514300.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
64091566	TTTTTC	T	43	2025.73	1.00	UPSTREAM(\|2525\|\|None\|Vigan.01G514200.01), UTR_5_PRIME(\|213\|\|None\|Vigan.01G514300.01)	Vigna nepalensis
64091571	C	CAAAAA	43	1989.73	1.00	UPSTREAM(\|2530\|\|None\|Vigan.01G514200.01), UTR_5_PRIME(\|212\|\|None\|Vigan.01G514300.01)	Vigna nepalensis
64091633	A	AG	56	2451.73	1.00	UPSTREAM(\|2592\|\|None\|Vigan.01G514200.01), UTR_5_PRIME(\|150\|\|None\|Vigan.01G514300.01)	Vigna nepalensis
64092573	AT	A	60	2687.73	1.00	INTRON(\|\|\|None\|Vigan.01G514300.01), UPSTREAM(\|3532\|\|None\|Vigan.01G514200.01)	Vigna nepalensis
64093453	ATC	A	76	3224.61	1.00	UPSTREAM(\|4412\|\|None\|Vigan.01G514200.01), UTR_3_PRIME(\|405\|\|None\|Vigan.01G514300.01)	Vigna nepalensis
64093765	G	GA	66	2615.73	1.00	UPSTREAM(\|4724\|\|None\|Vigan.01G514200.01), UTR_3_PRIME(\|717\|\|None\|Vigan.01G514300.01)	Vigna nepalensis