Variant information

Chr01:61537704 - 61542365

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
61537796CA602453.771.00UPSTREAM(|4680||None|Vigan.01G485600.01), UTR_3_PRIME(|65||None|Vigan.01G485500.01)Vigna nepalensis
61537899CT451714.771.00NON_SYNONYMOUS_CODING(MISSENSE|Gta/Ata|V229I|None|Vigan.01G485500.01), UPSTREAM(|4577||None|Vigan.01G485600.01)Vigna nepalensis
61538344AC552238.771.00INTRON(|||None|Vigan.01G485500.01), UPSTREAM(|4132||None|Vigan.01G485600.01)Vigna nepalensis
61538548TC461859.771.00INTRON(|||None|Vigan.01G485500.01), UPSTREAM(|3928||None|Vigan.01G485600.01)Vigna nepalensis
61539057AC612461.771.00INTRON(|||None|Vigan.01G485500.01), UPSTREAM(|3419||None|Vigan.01G485600.01)Vigna nepalensis
61539225AG682708.771.00SYNONYMOUS_CODING(SILENT|gcT/gcC|A127|None|Vigan.01G485500.01), UPSTREAM(|3251||None|Vigan.01G485600.01)Vigna nepalensis
61539416AT702756.771.00NON_SYNONYMOUS_CODING(MISSENSE|ttT/ttA|F89L|None|Vigan.01G485500.01), UPSTREAM(|3060||None|Vigan.01G485600.01)Vigna nepalensis
61539792CA692857.771.00INTRON(|||None|Vigan.01G485500.01), UPSTREAM(|2684||None|Vigan.01G485600.01)Vigna nepalensis
61539866GA642513.771.00INTRON(|||None|Vigan.01G485500.01), UPSTREAM(|2610||None|Vigan.01G485600.01)Vigna nepalensis
61539913TG572299.771.00INTRON(|||None|Vigan.01G485500.01), UPSTREAM(|2563||None|Vigan.01G485600.01)Vigna nepalensis
61540056TC451969.771.00INTRON(|||None|Vigan.01G485500.01), UPSTREAM(|2420||None|Vigan.01G485600.01)Vigna nepalensis
61540066AG462082.771.00INTRON(|||None|Vigan.01G485500.01), UPSTREAM(|2410||None|Vigan.01G485600.01)Vigna nepalensis
61540217GT501976.771.00INTRON(|||None|Vigan.01G485500.01), UPSTREAM(|2259||None|Vigan.01G485600.01)Vigna nepalensis
61540250AG411798.771.00INTRON(|||None|Vigan.01G485500.01), UPSTREAM(|2226||None|Vigan.01G485600.01)Vigna nepalensis
61540507CT652674.771.00INTRON(|||None|Vigan.01G485500.01), UPSTREAM(|1969||None|Vigan.01G485600.01)Vigna nepalensis
61540593CT642505.771.00INTRON(|||None|Vigan.01G485500.01), UPSTREAM(|1883||None|Vigan.01G485600.01)Vigna nepalensis
61541469CG401598.771.00DOWNSTREAM(|4364||None|Vigan.01G485700.01), UPSTREAM(|1007||None|Vigan.01G485600.01), UTR_5_PRIME(|131||None|Vigan.01G485500.01)Vigna nepalensis
61541494AC441679.771.00DOWNSTREAM(|4339||None|Vigan.01G485700.01), START_GAINED(|||None|Vigan.01G485500.01), UPSTREAM(|982||None|Vigan.01G485600.01), UTR_5_PRIME(|156||None|Vigan.01G485500.01)Vigna nepalensis
61541996TC421651.771.00DOWNSTREAM(|3837||None|Vigan.01G485700.01), UPSTREAM(|480||None|Vigan.01G485600.01), UTR_5_PRIME(|658||None|Vigan.01G485500.01)Vigna nepalensis
61542193GA712645.771.00DOWNSTREAM(|3640||None|Vigan.01G485700.01), UPSTREAM(|283||None|Vigan.01G485600.01), UTR_5_PRIME(|855||None|Vigan.01G485500.01)Vigna nepalensis
61542347CG572516.771.00DOWNSTREAM(|3486||None|Vigan.01G485700.01), UPSTREAM(|129||None|Vigan.01G485600.01), UTR_5_PRIME(|1009||None|Vigan.01G485500.01)Vigna nepalensis
61542348TA562516.771.00DOWNSTREAM(|3485||None|Vigan.01G485700.01), START_GAINED(|||None|Vigan.01G485500.01), UPSTREAM(|128||None|Vigan.01G485600.01), UTR_5_PRIME(|1010||None|Vigan.01G485500.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
61540254GTAG401789.731.00INTRON(|||None|Vigan.01G485500.01), UPSTREAM(|2221||None|Vigan.01G485600.01)Vigna nepalensis
61541220TAT471582.731.00DOWNSTREAM(|4612||None|Vigan.01G485700.01), INTRON(|||None|Vigan.01G485500.01), UPSTREAM(|1255||None|Vigan.01G485600.01)Vigna nepalensis
61542012ATCCA381672.731.00DOWNSTREAM(|3820||None|Vigan.01G485700.01), UPSTREAM(|463||None|Vigan.01G485600.01), UTR_5_PRIME(|675||None|Vigan.01G485500.01)Vigna nepalensis