VIGGS:Variant information

Chr01:59986145 - 59990249

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[SNPs] [Indels]

SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
59986299	G	A	49	1943.77	1.00	SYNONYMOUS_CODING(SILENT\|aaG/aaA\|K423\|None\|Vigan.01G470500.01), UTR_3_PRIME(\|1056\|\|None\|Vigan.01G470600.01)	Vigna nepalensis
59986383	G	T	62	2483.77	1.00	SYNONYMOUS_CODING(SILENT\|ctG/ctT\|L451\|None\|Vigan.01G470500.01), UTR_3_PRIME(\|972\|\|None\|Vigan.01G470600.01)	Vigna nepalensis
59986430	A	C	55	2210.77	1.00	INTRON(\|\|\|None\|Vigan.01G470500.01), UTR_3_PRIME(\|925\|\|None\|Vigan.01G470600.01)	Vigna nepalensis
59986539	C	T	53	2269.77	1.00	SYNONYMOUS_CODING(SILENT\|tcC/tcT\|S475\|None\|Vigan.01G470500.01), UTR_3_PRIME(\|816\|\|None\|Vigan.01G470600.01)	Vigna nepalensis
59986563	T	C	50	2210.77	1.00	SYNONYMOUS_CODING(SILENT\|aaT/aaC\|N483\|None\|Vigan.01G470500.01), UTR_3_PRIME(\|792\|\|None\|Vigan.01G470600.01)	Vigna nepalensis
59986643	G	C	57	2240.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|aGg/aCg\|R510T\|None\|Vigan.01G470500.01), UTR_3_PRIME(\|712\|\|None\|Vigan.01G470600.01)	Vigna nepalensis
59986884	G	A	53	2198.77	1.00	UTR_3_PRIME(\|471\|\|None\|Vigan.01G470600.01), UTR_3_PRIME(\|52\|\|None\|Vigan.01G470500.01)	Vigna nepalensis
59986898	T	A	51	2266.77	1.00	UTR_3_PRIME(\|457\|\|None\|Vigan.01G470600.01), UTR_3_PRIME(\|66\|\|None\|Vigan.01G470500.01)	Vigna nepalensis
59986899	A	T	51	2266.77	1.00	UTR_3_PRIME(\|456\|\|None\|Vigan.01G470600.01), UTR_3_PRIME(\|67\|\|None\|Vigan.01G470500.01)	Vigna nepalensis
59986947	G	C	61	2453.77	1.00	UTR_3_PRIME(\|115\|\|None\|Vigan.01G470500.01), UTR_3_PRIME(\|408\|\|None\|Vigan.01G470600.01)	Vigna nepalensis
59987050	C	T	60	2351.77	1.00	UTR_3_PRIME(\|218\|\|None\|Vigan.01G470500.01), UTR_3_PRIME(\|305\|\|None\|Vigan.01G470600.01)	Vigna nepalensis
59987628	A	T	50	1982.77	1.00	INTRON(\|\|\|None\|Vigan.01G470600.01), UTR_3_PRIME(\|796\|\|None\|Vigan.01G470500.01)	Vigna nepalensis
59987744	A	T	47	1890.77	1.00	INTRON(\|\|\|None\|Vigan.01G470600.01), UTR_3_PRIME(\|912\|\|None\|Vigan.01G470500.01)	Vigna nepalensis
59988294	C	T	63	2340.77	1.00	DOWNSTREAM(\|342\|\|None\|Vigan.01G470500.01), INTRON(\|\|\|None\|Vigan.01G470600.01)	Vigna nepalensis
59988452	A	G	53	2348.77	1.00	DOWNSTREAM(\|500\|\|None\|Vigan.01G470500.01), INTRON(\|\|\|None\|Vigan.01G470600.01)	Vigna nepalensis
59988640	G	A	50	1955.77	1.00	DOWNSTREAM(\|688\|\|None\|Vigan.01G470500.01), INTRON(\|\|\|None\|Vigan.01G470600.01)	Vigna nepalensis
59988828	C	A	47	1854.77	1.00	DOWNSTREAM(\|876\|\|None\|Vigan.01G470500.01), NON_SYNONYMOUS_CODING(MISSENSE\|Gtg/Ttg\|V191L\|None\|Vigan.01G470600.01)	Vigna nepalensis
59988919	A	T	63	2404.77	1.00	DOWNSTREAM(\|967\|\|None\|Vigan.01G470500.01), INTRON(\|\|\|None\|Vigan.01G470600.01)	Vigna nepalensis
59988992	G	A	54	1976.77	1.00	DOWNSTREAM(\|1040\|\|None\|Vigan.01G470500.01), INTRON(\|\|\|None\|Vigan.01G470600.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
59987271	C	CA	54	2145.73	1.00	UTR_3_PRIME(\|440\|\|None\|Vigan.01G470500.01), UTR_3_PRIME(\|83\|\|None\|Vigan.01G470600.01)	Vigna nepalensis
59988000	TA	T	56	1684.73	1.00	DOWNSTREAM(\|49\|\|None\|Vigan.01G470500.01), INTRON(\|\|\|None\|Vigan.01G470600.01)	Vigna nepalensis
59988323	CCAATGTAAACACGTAACAGAGTAGTACAAT	C	56	2444.73	1.00	DOWNSTREAM(\|372\|\|None\|Vigan.01G470500.01), INTRON(\|\|\|None\|Vigan.01G470600.01)	Vigna nepalensis
59988461	TAA	T	57	2483.73	1.00	DOWNSTREAM(\|510\|\|None\|Vigan.01G470500.01), INTRON(\|\|\|None\|Vigan.01G470600.01)	Vigna nepalensis
59988496	AT	A	59	2076.73	1.00	DOWNSTREAM(\|545\|\|None\|Vigan.01G470500.01), INTRON(\|\|\|None\|Vigan.01G470600.01)	Vigna nepalensis
59989858	G	GA	40	1180.73	1.00	DOWNSTREAM(\|1907\|\|None\|Vigan.01G470500.01), INTRON(\|\|\|None\|Vigan.01G470600.01)	Vigna nepalensis
59990186	G	GTTC	57	2550.73	1.00	DOWNSTREAM(\|2235\|\|None\|Vigan.01G470500.01), UTR_5_PRIME(\|35\|\|None\|Vigan.01G470600.01)	Vigna nepalensis