Variant information

Chr01:59398849 - 59403065

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
59399119GA732863.771.00DOWNSTREAM(|3774||None|Vigan.01G464500.01), NON_SYNONYMOUS_CODING(MISSENSE|Gag/Aag|E15K|None|Vigan.01G464600.01)Vigna nepalensis
59399186AG722935.771.00DOWNSTREAM(|3841||None|Vigan.01G464500.01), INTRON(|||None|Vigan.01G464600.01)Vigna nepalensis
59399339TC773196.771.00DOWNSTREAM(|3994||None|Vigan.01G464500.01), SYNONYMOUS_CODING(SILENT|aaT/aaC|N60|None|Vigan.01G464600.01)Vigna nepalensis
59399534TG662639.771.00DOWNSTREAM(|4189||None|Vigan.01G464500.01), INTRON(|||None|Vigan.01G464600.01)Vigna nepalensis
59399639CT371459.771.00DOWNSTREAM(|4294||None|Vigan.01G464500.01), INTRON(|||None|Vigan.01G464600.01)Vigna nepalensis
59399981AG562154.771.00DOWNSTREAM(|4636||None|Vigan.01G464500.01), SYNONYMOUS_CODING(SILENT|gtA/gtG|V210|None|Vigan.01G464600.01)Vigna nepalensis
59400255TC431735.771.00DOWNSTREAM(|4910||None|Vigan.01G464500.01), INTRON(|||None|Vigan.01G464600.01)Vigna nepalensis
59400369GC632465.771.00INTRON(|||None|Vigan.01G464600.01)Vigna nepalensis
59400453AG532127.771.00INTRON(|||None|Vigan.01G464600.01)Vigna nepalensis
59400509CG311359.771.00INTRON(|||None|Vigan.01G464600.01)Vigna nepalensis
59400511CT301449.771.00INTRON(|||None|Vigan.01G464600.01)Vigna nepalensis
59400516AT331631.771.00INTRON(|||None|Vigan.01G464600.01)Vigna nepalensis
59400518GC331496.771.00INTRON(|||None|Vigan.01G464600.01)Vigna nepalensis
59400538AC331443.771.00INTRON(|||None|Vigan.01G464600.01)Vigna nepalensis
59400539AC321443.771.00INTRON(|||None|Vigan.01G464600.01)Vigna nepalensis
59400552CG311366.771.00INTRON(|||None|Vigan.01G464600.01)Vigna nepalensis
59400554CT311366.771.00INTRON(|||None|Vigan.01G464600.01)Vigna nepalensis
59400563TC301321.771.00INTRON(|||None|Vigan.01G464600.01)Vigna nepalensis
59400566GC301314.771.00INTRON(|||None|Vigan.01G464600.01)Vigna nepalensis
59400577TC301304.771.00INTRON(|||None|Vigan.01G464600.01)Vigna nepalensis
59400587CT271226.771.00INTRON(|||None|Vigan.01G464600.01)Vigna nepalensis
59400589AC271231.771.00INTRON(|||None|Vigan.01G464600.01)Vigna nepalensis
59400597TC261231.771.00INTRON(|||None|Vigan.01G464600.01)Vigna nepalensis
59400600CT261141.771.00INTRON(|||None|Vigan.01G464600.01)Vigna nepalensis
59400626GT14594.771.00INTRON(|||None|Vigan.01G464600.01)Vigna nepalensis
59400630TC12556.771.00INTRON(|||None|Vigan.01G464600.01)Vigna nepalensis
59400640TC10421.771.00INTRON(|||None|Vigan.01G464600.01)Vigna nepalensis
59401138CA261133.771.00INTRON(|||None|Vigan.01G464600.01), UPSTREAM(|4999||None|Vigan.01G464700.01)Vigna nepalensis
59401147CT261228.771.00INTRON(|||None|Vigan.01G464600.01), UPSTREAM(|4990||None|Vigan.01G464700.01)Vigna nepalensis
59401149CT251231.771.00INTRON(|||None|Vigan.01G464600.01), UPSTREAM(|4988||None|Vigan.01G464700.01)Vigna nepalensis
59401154CT261141.771.00INTRON(|||None|Vigan.01G464600.01), UPSTREAM(|4983||None|Vigan.01G464700.01)Vigna nepalensis
59401155CA241141.771.00INTRON(|||None|Vigan.01G464600.01), UPSTREAM(|4982||None|Vigan.01G464700.01)Vigna nepalensis
59401159AG231051.771.00INTRON(|||None|Vigan.01G464600.01), UPSTREAM(|4978||None|Vigan.01G464700.01)Vigna nepalensis
59401163GA231051.771.00INTRON(|||None|Vigan.01G464600.01), UPSTREAM(|4974||None|Vigan.01G464700.01)Vigna nepalensis
59401166GA251096.771.00INTRON(|||None|Vigan.01G464600.01), UPSTREAM(|4971||None|Vigan.01G464700.01)Vigna nepalensis
59401171AG251096.771.00INTRON(|||None|Vigan.01G464600.01), UPSTREAM(|4966||None|Vigan.01G464700.01)Vigna nepalensis
59401172TG251096.771.00INTRON(|||None|Vigan.01G464600.01), UPSTREAM(|4965||None|Vigan.01G464700.01)Vigna nepalensis
59401217TG361580.771.00INTRON(|||None|Vigan.01G464600.01), UPSTREAM(|4920||None|Vigan.01G464700.01)Vigna nepalensis
59401232AT421951.771.00INTRON(|||None|Vigan.01G464600.01), UPSTREAM(|4905||None|Vigan.01G464700.01)Vigna nepalensis
59401271CG642851.771.00INTRON(|||None|Vigan.01G464600.01), UPSTREAM(|4866||None|Vigan.01G464700.01)Vigna nepalensis
59401366TC532337.771.00INTRON(|||None|Vigan.01G464600.01), UPSTREAM(|4771||None|Vigan.01G464700.01)Vigna nepalensis
59401391CT512446.771.00INTRON(|||None|Vigan.01G464600.01), UPSTREAM(|4746||None|Vigan.01G464700.01)Vigna nepalensis
59401407GT622761.771.00INTRON(|||None|Vigan.01G464600.01), UPSTREAM(|4730||None|Vigan.01G464700.01)Vigna nepalensis
59401412TC612805.771.00INTRON(|||None|Vigan.01G464600.01), UPSTREAM(|4725||None|Vigan.01G464700.01)Vigna nepalensis
59401435TC743138.771.00INTRON(|||None|Vigan.01G464600.01), UPSTREAM(|4702||None|Vigan.01G464700.01)Vigna nepalensis
59401494GC692821.771.00INTRON(|||None|Vigan.01G464600.01), UPSTREAM(|4643||None|Vigan.01G464700.01)Vigna nepalensis
59401543GC512046.771.00INTRON(|||None|Vigan.01G464600.01), UPSTREAM(|4594||None|Vigan.01G464700.01)Vigna nepalensis
59401653CA542166.771.00INTRON(|||None|Vigan.01G464600.01), UPSTREAM(|4484||None|Vigan.01G464700.01)Vigna nepalensis
59401753GA532059.771.00INTRON(|||None|Vigan.01G464600.01), UPSTREAM(|4384||None|Vigan.01G464700.01)Vigna nepalensis
59401779CG632451.771.00INTRON(|||None|Vigan.01G464600.01), UPSTREAM(|4358||None|Vigan.01G464700.01)Vigna nepalensis
59401865GT532179.771.00INTRON(|||None|Vigan.01G464600.01), UPSTREAM(|4272||None|Vigan.01G464700.01)Vigna nepalensis
59401878AG471905.771.00INTRON(|||None|Vigan.01G464600.01), UPSTREAM(|4259||None|Vigan.01G464700.01)Vigna nepalensis
59402357GA532143.771.00SYNONYMOUS_CODING(SILENT|gaG/gaA|E451|None|Vigan.01G464600.01), UPSTREAM(|3780||None|Vigan.01G464700.01)Vigna nepalensis
59402627AG582180.771.00SYNONYMOUS_CODING(SILENT|ggA/ggG|G541|None|Vigan.01G464600.01), UPSTREAM(|3510||None|Vigan.01G464700.01)Vigna nepalensis
59402736GA502228.771.00NON_SYNONYMOUS_CODING(MISSENSE|Gct/Act|A578T|None|Vigan.01G464600.01), UPSTREAM(|3401||None|Vigan.01G464700.01)Vigna nepalensis
59402737CG482228.771.00NON_SYNONYMOUS_CODING(MISSENSE|gCt/gGt|A578G|None|Vigan.01G464600.01), UPSTREAM(|3400||None|Vigan.01G464700.01)Vigna nepalensis
59402937GA552183.771.00UPSTREAM(|3200||None|Vigan.01G464700.01), UTR_3_PRIME(|139||None|Vigan.01G464600.01)Vigna nepalensis
59403058AT612539.771.00UPSTREAM(|3079||None|Vigan.01G464700.01), UTR_3_PRIME(|260||None|Vigan.01G464600.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
59398864TGT341173.731.00DOWNSTREAM(|3520||None|Vigan.01G464500.01), UTR_5_PRIME(|212||None|Vigan.01G464600.01)Vigna nepalensis
59400622ACCCA14585.731.00INTRON(|||None|Vigan.01G464600.01)Vigna nepalensis
59400627AATAG13585.731.00INTRON(|||None|Vigan.01G464600.01)Vigna nepalensis
59401225TCT411891.731.00INTRON(|||None|Vigan.01G464600.01), UPSTREAM(|4911||None|Vigan.01G464700.01)Vigna nepalensis
59401228GAG421936.731.00INTRON(|||None|Vigan.01G464600.01), UPSTREAM(|4908||None|Vigan.01G464700.01)Vigna nepalensis
59401248GCG522527.731.00INTRON(|||None|Vigan.01G464600.01), UPSTREAM(|4888||None|Vigan.01G464700.01)Vigna nepalensis
59401282CAC662967.731.00INTRON(|||None|Vigan.01G464600.01), UPSTREAM(|4854||None|Vigan.01G464700.01)Vigna nepalensis
59401364CGC532283.731.00INTRON(|||None|Vigan.01G464600.01), UPSTREAM(|4772||None|Vigan.01G464700.01)Vigna nepalensis