Variant information

Chr01:54722953 - 54728669

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
54722988TG632482.771.00DOWNSTREAM(|3567||None|Vigan.01G409400.01), UTR_5_PRIME(|148||None|Vigan.01G409500.01)Vigna nepalensis
54723019GA562321.771.00DOWNSTREAM(|3598||None|Vigan.01G409400.01), UTR_5_PRIME(|117||None|Vigan.01G409500.01)Vigna nepalensis
54723041CG572562.771.00DOWNSTREAM(|3620||None|Vigan.01G409400.01), UTR_5_PRIME(|95||None|Vigan.01G409500.01)Vigna nepalensis
54723054GA522142.771.00DOWNSTREAM(|3633||None|Vigan.01G409400.01), UTR_5_PRIME(|82||None|Vigan.01G409500.01)Vigna nepalensis
54723127CA501882.771.00DOWNSTREAM(|3706||None|Vigan.01G409400.01), UTR_5_PRIME(|9||None|Vigan.01G409500.01)Vigna nepalensis
54723249CT511950.771.00DOWNSTREAM(|3828||None|Vigan.01G409400.01), INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54723801AG401596.771.00DOWNSTREAM(|4380||None|Vigan.01G409400.01), NON_SYNONYMOUS_CODING(MISSENSE|Aag/Gag|K144E|None|Vigan.01G409500.01)Vigna nepalensis
54724204TC552103.771.00DOWNSTREAM(|4783||None|Vigan.01G409400.01), SYNONYMOUS_CODING(SILENT|gcT/gcC|A221|None|Vigan.01G409500.01)Vigna nepalensis
54724256AC491982.771.00DOWNSTREAM(|4835||None|Vigan.01G409400.01), INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54724331AG512029.771.00DOWNSTREAM(|4910||None|Vigan.01G409400.01), INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54724477TC431719.771.00INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54724533GA542438.771.00INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54724546AG542471.771.00INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54724765AT612405.771.00INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54724802TG572302.771.00INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54724833AT612469.771.00INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54724921AC512109.771.00INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54725052AG582271.771.00INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54725067AG532087.771.00INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54725129AC411619.771.00INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54725142AT431643.771.00INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54725159GA461777.771.00INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54725337CT481999.771.00INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54725445CA582347.771.00INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54725546CG642520.771.00NON_SYNONYMOUS_CODING(MISSENSE|tCt/tGt|S324C|None|Vigan.01G409500.01)Vigna nepalensis
54725851GA572387.771.00INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54726406AG632649.771.00NON_SYNONYMOUS_CODING(MISSENSE|Att/Gtt|I411V|None|Vigan.01G409500.01)Vigna nepalensis
54726423TC592470.771.00SYNONYMOUS_CODING(SILENT|gaT/gaC|D416|None|Vigan.01G409500.01)Vigna nepalensis
54726507CT662639.771.00DOWNSTREAM(|4971||None|Vigan.01G409600.01), INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54726746GA642567.771.00DOWNSTREAM(|4732||None|Vigan.01G409600.01), NON_SYNONYMOUS_CODING(MISSENSE|Gtt/Att|V462I|None|Vigan.01G409500.01)Vigna nepalensis
54726778AG512134.771.00DOWNSTREAM(|4700||None|Vigan.01G409600.01), SYNONYMOUS_CODING(SILENT|ggA/ggG|G472|None|Vigan.01G409500.01)Vigna nepalensis
54726856CT662677.771.00DOWNSTREAM(|4622||None|Vigan.01G409600.01), INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54726890AC642534.771.00DOWNSTREAM(|4588||None|Vigan.01G409600.01), INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54726968AG552287.771.00DOWNSTREAM(|4510||None|Vigan.01G409600.01), INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54727001AG512080.771.00DOWNSTREAM(|4477||None|Vigan.01G409600.01), INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54727130CT622633.771.00DOWNSTREAM(|4348||None|Vigan.01G409600.01), INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54727242TC562253.771.00DOWNSTREAM(|4236||None|Vigan.01G409600.01), INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54727299TA592348.771.00DOWNSTREAM(|4179||None|Vigan.01G409600.01), INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54727496GT532217.771.00DOWNSTREAM(|3982||None|Vigan.01G409600.01), INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54727552TA542341.771.00DOWNSTREAM(|3926||None|Vigan.01G409600.01), INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54727562CT552391.771.00DOWNSTREAM(|3916||None|Vigan.01G409600.01), INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54727638CA532392.771.00DOWNSTREAM(|3840||None|Vigan.01G409600.01), INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54727639AT532429.771.00DOWNSTREAM(|3839||None|Vigan.01G409600.01), INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54727755TC522066.771.00DOWNSTREAM(|3723||None|Vigan.01G409600.01), INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54727788GA612477.771.00DOWNSTREAM(|3690||None|Vigan.01G409600.01), INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54727909GA321147.771.00DOWNSTREAM(|3569||None|Vigan.01G409600.01), INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54728004TC511958.771.00DOWNSTREAM(|3474||None|Vigan.01G409600.01), INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54728063AC461901.771.00DOWNSTREAM(|3415||None|Vigan.01G409600.01), INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54728447CA532169.771.00DOWNSTREAM(|3031||None|Vigan.01G409600.01), UTR_3_PRIME(|262||None|Vigan.01G409500.01)Vigna nepalensis
54728475TG612414.771.00DOWNSTREAM(|3003||None|Vigan.01G409600.01), UTR_3_PRIME(|290||None|Vigan.01G409500.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
54723034GAG572513.731.00DOWNSTREAM(|3614||None|Vigan.01G409400.01), UTR_5_PRIME(|101||None|Vigan.01G409500.01)Vigna nepalensis
54724538AAAAG572654.731.00INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54724620GAG481336.731.00INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54724787AAT562057.731.00INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54725340CTC461368.731.00INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54727028TTACAC462104.731.00DOWNSTREAM(|4449||None|Vigan.01G409600.01), INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54727051AATATGTG572520.731.00DOWNSTREAM(|4426||None|Vigan.01G409600.01), INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54727644TAT532369.731.00DOWNSTREAM(|3833||None|Vigan.01G409600.01), INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54727839ATAATGAACATGA582559.731.00DOWNSTREAM(|3638||None|Vigan.01G409600.01), INTRON(|||None|Vigan.01G409500.01)Vigna nepalensis
54728415TTTCCTACTATCCA522463.731.00DOWNSTREAM(|3062||None|Vigan.01G409600.01), UTR_3_PRIME(|231||None|Vigan.01G409500.01)Vigna nepalensis