Variant information

Chr01:539315 - 541728

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
539535GT672763.771.00DOWNSTREAM(|2485||None|Vigan.01G008900.01), DOWNSTREAM(|3014||None|Vigan.01G008600.01), UPSTREAM(|2874||None|Vigan.01G008700.01), UTR_5_PRIME(|178||None|Vigan.01G008800.01)Vigna nepalensis
539686GA461882.771.00DOWNSTREAM(|2334||None|Vigan.01G008900.01), DOWNSTREAM(|3165||None|Vigan.01G008600.01), UPSTREAM(|3025||None|Vigan.01G008700.01), UTR_5_PRIME(|27||None|Vigan.01G008800.01)Vigna nepalensis
539754TC612396.771.00DOWNSTREAM(|2266||None|Vigan.01G008900.01), DOWNSTREAM(|3233||None|Vigan.01G008600.01), SYNONYMOUS_CODING(SILENT|ggT/ggC|G14|None|Vigan.01G008800.01), UPSTREAM(|3093||None|Vigan.01G008700.01), UPSTREAM(|4994||None|Vigan.01G009000.01)Vigna nepalensis
539821CT552172.771.00DOWNSTREAM(|2199||None|Vigan.01G008900.01), DOWNSTREAM(|3300||None|Vigan.01G008600.01), INTRON(|||None|Vigan.01G008800.01), UPSTREAM(|3160||None|Vigan.01G008700.01), UPSTREAM(|4927||None|Vigan.01G009000.01)Vigna nepalensis
539845AT572354.771.00DOWNSTREAM(|2175||None|Vigan.01G008900.01), DOWNSTREAM(|3324||None|Vigan.01G008600.01), INTRON(|||None|Vigan.01G008800.01), UPSTREAM(|3184||None|Vigan.01G008700.01), UPSTREAM(|4903||None|Vigan.01G009000.01)Vigna nepalensis
540680GA421729.771.00DOWNSTREAM(|1340||None|Vigan.01G008900.01), DOWNSTREAM(|4159||None|Vigan.01G008600.01), INTRON(|||None|Vigan.01G008800.01), UPSTREAM(|4019||None|Vigan.01G008700.01), UPSTREAM(|4068||None|Vigan.01G009000.01)Vigna nepalensis
540793TC542240.771.00DOWNSTREAM(|1227||None|Vigan.01G008900.01), DOWNSTREAM(|4272||None|Vigan.01G008600.01), INTRON(|||None|Vigan.01G008800.01), UPSTREAM(|3955||None|Vigan.01G009000.01), UPSTREAM(|4132||None|Vigan.01G008700.01)Vigna nepalensis
540823TC572169.771.00DOWNSTREAM(|1197||None|Vigan.01G008900.01), DOWNSTREAM(|4302||None|Vigan.01G008600.01), SYNONYMOUS_CODING(SILENT|atT/atC|I224|None|Vigan.01G008800.01), UPSTREAM(|3925||None|Vigan.01G009000.01), UPSTREAM(|4162||None|Vigan.01G008700.01)Vigna nepalensis
541102AG642357.771.00DOWNSTREAM(|4581||None|Vigan.01G008600.01), DOWNSTREAM(|918||None|Vigan.01G008900.01), UPSTREAM(|3646||None|Vigan.01G009000.01), UPSTREAM(|4441||None|Vigan.01G008700.01), UTR_3_PRIME(|18||None|Vigan.01G008800.01)Vigna nepalensis
541356GC622435.771.00DOWNSTREAM(|4835||None|Vigan.01G008600.01), DOWNSTREAM(|664||None|Vigan.01G008900.01), UPSTREAM(|3392||None|Vigan.01G009000.01), UPSTREAM(|4695||None|Vigan.01G008700.01), UTR_3_PRIME(|272||None|Vigan.01G008800.01)Vigna nepalensis
541537CG562492.771.00DOWNSTREAM(|483||None|Vigan.01G008900.01), UPSTREAM(|3211||None|Vigan.01G009000.01), UPSTREAM(|4876||None|Vigan.01G008700.01), UTR_3_PRIME(|453||None|Vigan.01G008800.01)Vigna nepalensis
541541AC542459.771.00DOWNSTREAM(|479||None|Vigan.01G008900.01), UPSTREAM(|3207||None|Vigan.01G009000.01), UPSTREAM(|4880||None|Vigan.01G008700.01), UTR_3_PRIME(|457||None|Vigan.01G008800.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
539307TAGATTAAAAGTGT602789.731.00DOWNSTREAM(|2712||None|Vigan.01G008900.01), DOWNSTREAM(|2787||None|Vigan.01G008600.01), INTERGENIC(||||), INTRAGENIC(|||None|), UPSTREAM(|2647||None|Vigan.01G008700.01), UPSTREAM(|7||None|Vigan.01G008800.01), UTR_5_PRIME(|394||None|Vigan.01G008800.01)Vigna nepalensis
539323TTAAT612798.731.00DOWNSTREAM(|2696||None|Vigan.01G008900.01), DOWNSTREAM(|2803||None|Vigan.01G008600.01), UPSTREAM(|2663||None|Vigan.01G008700.01), UTR_5_PRIME(|387||None|Vigan.01G008800.01)Vigna nepalensis
539328TATAT622708.731.00DOWNSTREAM(|2691||None|Vigan.01G008900.01), DOWNSTREAM(|2808||None|Vigan.01G008600.01), UPSTREAM(|2668||None|Vigan.01G008700.01), UTR_5_PRIME(|382||None|Vigan.01G008800.01)Vigna nepalensis