Variant information

Chr01:53103548 - 53107916

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 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
53103712GC341387.771.00DOWNSTREAM(|1906||None|Vigan.01G391300.01), UTR_3_PRIME(|551||None|Vigan.01G391400.01)Vigna nepalensis
53103945AT762957.771.00DOWNSTREAM(|2139||None|Vigan.01G391300.01), UTR_3_PRIME(|318||None|Vigan.01G391400.01)Vigna nepalensis
53104201TC572314.771.00DOWNSTREAM(|2395||None|Vigan.01G391300.01), UTR_3_PRIME(|62||None|Vigan.01G391400.01)Vigna nepalensis
53104556AC562252.771.00DOWNSTREAM(|2750||None|Vigan.01G391300.01), INTRON(|||None|Vigan.01G391400.01)Vigna nepalensis
53104626TC622377.771.00DOWNSTREAM(|2820||None|Vigan.01G391300.01), INTRON(|||None|Vigan.01G391400.01)Vigna nepalensis
53104781TA531965.771.00DOWNSTREAM(|2975||None|Vigan.01G391300.01), INTRON(|||None|Vigan.01G391400.01)Vigna nepalensis
53104867AT502064.771.00DOWNSTREAM(|3061||None|Vigan.01G391300.01), INTRON(|||None|Vigan.01G391400.01)Vigna nepalensis
53104896GC542185.771.00DOWNSTREAM(|3090||None|Vigan.01G391300.01), INTRON(|||None|Vigan.01G391400.01)Vigna nepalensis
53105132AC512225.771.00DOWNSTREAM(|3326||None|Vigan.01G391300.01), INTRON(|||None|Vigan.01G391400.01)Vigna nepalensis
53105135GT472190.771.00DOWNSTREAM(|3329||None|Vigan.01G391300.01), INTRON(|||None|Vigan.01G391400.01)Vigna nepalensis
53105217GA472061.771.00DOWNSTREAM(|3411||None|Vigan.01G391300.01), INTRON(|||None|Vigan.01G391400.01)Vigna nepalensis
53105224AC452014.771.00DOWNSTREAM(|3418||None|Vigan.01G391300.01), INTRON(|||None|Vigan.01G391400.01)Vigna nepalensis
53105643GA612480.771.00DOWNSTREAM(|3837||None|Vigan.01G391300.01), INTRON(|||None|Vigan.01G391400.01)Vigna nepalensis
53105887GT511936.771.00DOWNSTREAM(|4081||None|Vigan.01G391300.01), INTRON(|||None|Vigan.01G391400.01)Vigna nepalensis
53105952GA572099.731.00DOWNSTREAM(|4146||None|Vigan.01G391300.01), INTRON(|||None|Vigan.01G391400.01)Vigna nepalensis
53106324GA481928.771.00DOWNSTREAM(|4518||None|Vigan.01G391300.01), INTRON(|||None|Vigan.01G391400.01)Vigna nepalensis
53106355AC472151.771.00DOWNSTREAM(|4549||None|Vigan.01G391300.01), INTRON(|||None|Vigan.01G391400.01)Vigna nepalensis
53106360TG502288.771.00DOWNSTREAM(|4554||None|Vigan.01G391300.01), INTRON(|||None|Vigan.01G391400.01)Vigna nepalensis
53106388CG532192.771.00DOWNSTREAM(|4582||None|Vigan.01G391300.01), INTRON(|||None|Vigan.01G391400.01)Vigna nepalensis
53106516CT501957.771.00DOWNSTREAM(|4710||None|Vigan.01G391300.01), INTRON(|||None|Vigan.01G391400.01)Vigna nepalensis
53106703CT441744.771.00DOWNSTREAM(|4897||None|Vigan.01G391300.01), INTRON(|||None|Vigan.01G391400.01), SPLICE_SITE_REGION(|||None|Vigan.01G391400.01)Vigna nepalensis
53106795GA572192.771.00DOWNSTREAM(|4989||None|Vigan.01G391300.01), INTRON(|||None|Vigan.01G391400.01)Vigna nepalensis
53106883AT381380.771.00INTRON(|||None|Vigan.01G391400.01)Vigna nepalensis
53106974CA522179.771.00INTRON(|||None|Vigan.01G391400.01)Vigna nepalensis
53107012GA502251.771.00INTRON(|||None|Vigan.01G391400.01)Vigna nepalensis
53107015AG502251.771.00INTRON(|||None|Vigan.01G391400.01)Vigna nepalensis
53107130CT712699.771.00INTRON(|||None|Vigan.01G391400.01)Vigna nepalensis
53107165CA783053.771.00INTRON(|||None|Vigan.01G391400.01)Vigna nepalensis
53107396CA662523.771.00INTRON(|||None|Vigan.01G391400.01)Vigna nepalensis
53107488TG582222.771.00INTRON(|||None|Vigan.01G391400.01)Vigna nepalensis
53107633CT512027.771.00INTRON(|||None|Vigan.01G391400.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
53106856AATT461902.731.00INTRON(|||None|Vigan.01G391400.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
53104047(TA)11(TA)5492128.731.00DOWNSTREAM(|2242||None|Vigan.01G391300.01), UTR_3_PRIME(|204||None|Vigan.01G391400.01)Vigna nepalensis