Variant information

Chr01:51755785 - 51759670

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
51755793CA511907.771.00DOWNSTREAM(|4661||None|Vigan.01G378900.01), UPSTREAM(|1023||None|Vigan.01G379000.01), UPSTREAM(|2847||None|Vigan.01G379100.01), UTR_5_PRIME(|12||None|Vigan.01G379200.01)Vigna nepalensis
51755820CA472111.771.00DOWNSTREAM(|4688||None|Vigan.01G378900.01), SYNONYMOUS_CODING(SILENT|Cga/Aga|R6|None|Vigan.01G379200.01), UPSTREAM(|1050||None|Vigan.01G379000.01), UPSTREAM(|2874||None|Vigan.01G379100.01)Vigna nepalensis
51755823GA482111.771.00DOWNSTREAM(|4691||None|Vigan.01G378900.01), NON_SYNONYMOUS_CODING(MISSENSE|Gtg/Atg|V7M|None|Vigan.01G379200.01), UPSTREAM(|1053||None|Vigan.01G379000.01), UPSTREAM(|2877||None|Vigan.01G379100.01)Vigna nepalensis
51755869AG512064.771.00DOWNSTREAM(|4737||None|Vigan.01G378900.01), NON_SYNONYMOUS_CODING(MISSENSE|aAa/aGa|K22R|None|Vigan.01G379200.01), UPSTREAM(|1099||None|Vigan.01G379000.01), UPSTREAM(|2923||None|Vigan.01G379100.01)Vigna nepalensis
51756227TC572202.771.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|1457||None|Vigan.01G379000.01), UPSTREAM(|3281||None|Vigan.01G379100.01)Vigna nepalensis
51756269GA602606.771.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|1499||None|Vigan.01G379000.01), UPSTREAM(|3323||None|Vigan.01G379100.01)Vigna nepalensis
51756282CT562580.771.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|1512||None|Vigan.01G379000.01), UPSTREAM(|3336||None|Vigan.01G379100.01)Vigna nepalensis
51756595AG552156.771.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|1825||None|Vigan.01G379000.01), UPSTREAM(|3649||None|Vigan.01G379100.01)Vigna nepalensis
51756633AG552226.771.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|1863||None|Vigan.01G379000.01), UPSTREAM(|3687||None|Vigan.01G379100.01)Vigna nepalensis
51756985AC441727.771.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|2215||None|Vigan.01G379000.01), UPSTREAM(|4039||None|Vigan.01G379100.01)Vigna nepalensis
51757045GA542080.771.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|2275||None|Vigan.01G379000.01), UPSTREAM(|4099||None|Vigan.01G379100.01)Vigna nepalensis
51757082TC672648.771.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|2312||None|Vigan.01G379000.01), UPSTREAM(|4136||None|Vigan.01G379100.01)Vigna nepalensis
51757128TC542047.771.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|2358||None|Vigan.01G379000.01), UPSTREAM(|4182||None|Vigan.01G379100.01)Vigna nepalensis
51757239GT522356.771.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|2469||None|Vigan.01G379000.01), UPSTREAM(|4293||None|Vigan.01G379100.01)Vigna nepalensis
51757248GT502248.771.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|2478||None|Vigan.01G379000.01), UPSTREAM(|4302||None|Vigan.01G379100.01)Vigna nepalensis
51757277CT501872.771.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|2507||None|Vigan.01G379000.01), UPSTREAM(|4331||None|Vigan.01G379100.01)Vigna nepalensis
51757308TC522162.771.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|2538||None|Vigan.01G379000.01), UPSTREAM(|4362||None|Vigan.01G379100.01)Vigna nepalensis
51757398TA421781.771.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|2628||None|Vigan.01G379000.01), UPSTREAM(|4452||None|Vigan.01G379100.01)Vigna nepalensis
51757487AC682725.771.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|2717||None|Vigan.01G379000.01), UPSTREAM(|4541||None|Vigan.01G379100.01)Vigna nepalensis
51757600AT592333.771.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|2830||None|Vigan.01G379000.01), UPSTREAM(|4654||None|Vigan.01G379100.01)Vigna nepalensis
51757694AG672747.771.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|2924||None|Vigan.01G379000.01), UPSTREAM(|4748||None|Vigan.01G379100.01)Vigna nepalensis
51757850AT602432.771.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|3080||None|Vigan.01G379000.01), UPSTREAM(|4904||None|Vigan.01G379100.01)Vigna nepalensis
51758256AG622428.771.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|3486||None|Vigan.01G379000.01)Vigna nepalensis
51758383TC532383.771.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|3613||None|Vigan.01G379000.01)Vigna nepalensis
51758399AG592748.771.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|3629||None|Vigan.01G379000.01)Vigna nepalensis
51758432AT672953.771.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|3662||None|Vigan.01G379000.01)Vigna nepalensis
51758526CT703080.771.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|3756||None|Vigan.01G379000.01)Vigna nepalensis
51758539CG713125.771.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|3769||None|Vigan.01G379000.01)Vigna nepalensis
51758606TC773023.771.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|3836||None|Vigan.01G379000.01)Vigna nepalensis
51758854CT602619.771.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|4084||None|Vigan.01G379000.01)Vigna nepalensis
51758876TA562495.771.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|4106||None|Vigan.01G379000.01)Vigna nepalensis
51759022CT612512.771.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|4252||None|Vigan.01G379000.01)Vigna nepalensis
51759207AC592355.771.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|4437||None|Vigan.01G379000.01)Vigna nepalensis
51759256GT592667.771.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|4486||None|Vigan.01G379000.01)Vigna nepalensis
51759257AC582667.771.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|4487||None|Vigan.01G379000.01)Vigna nepalensis
51759321GA431748.771.00SYNONYMOUS_CODING(SILENT|ccG/ccA|P155|None|Vigan.01G379200.01), UPSTREAM(|4551||None|Vigan.01G379000.01)Vigna nepalensis
51759378TG401665.771.00UPSTREAM(|4608||None|Vigan.01G379000.01), UTR_3_PRIME(|54||None|Vigan.01G379200.01)Vigna nepalensis
51759396GT391519.771.00UPSTREAM(|4626||None|Vigan.01G379000.01), UTR_3_PRIME(|72||None|Vigan.01G379200.01)Vigna nepalensis
51759474CT441821.771.00UPSTREAM(|4704||None|Vigan.01G379000.01), UTR_3_PRIME(|150||None|Vigan.01G379200.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
51756289TTTTAT502325.731.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|1520||None|Vigan.01G379000.01), UPSTREAM(|3344||None|Vigan.01G379100.01)Vigna nepalensis
51757176ATGGTGA431882.731.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|2407||None|Vigan.01G379000.01), UPSTREAM(|4231||None|Vigan.01G379100.01)Vigna nepalensis
51757215TTTTACAGCAAATGTAT502280.731.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|2446||None|Vigan.01G379000.01), UPSTREAM(|4270||None|Vigan.01G379100.01)Vigna nepalensis
51757285AACACCAC512324.731.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|2516||None|Vigan.01G379000.01), UPSTREAM(|4340||None|Vigan.01G379100.01)Vigna nepalensis
51757808ATA672582.731.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|3039||None|Vigan.01G379000.01), UPSTREAM(|4863||None|Vigan.01G379100.01)Vigna nepalensis
51758084CTTC502203.731.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|3315||None|Vigan.01G379000.01)Vigna nepalensis
51758409ATA612902.731.00INTRON(|||None|Vigan.01G379200.01), UPSTREAM(|3640||None|Vigan.01G379000.01)Vigna nepalensis
51759635TTTGCAATCAAAA452201.731.00UPSTREAM(|4866||None|Vigan.01G379000.01), UTR_3_PRIME(|312||None|Vigan.01G379200.01)Vigna nepalensis