Variant information

Chr01:51122098 - 51125400

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
51122116CG441661.771.00UPSTREAM(|3518||None|Vigan.01G373000.01), UPSTREAM(|4054||None|Vigan.01G373300.01), UPSTREAM(|4603||None|Vigan.01G373100.01), UTR_5_PRIME(|99||None|Vigan.01G373200.01)Vigna nepalensis
51122168GA421647.771.00UPSTREAM(|3570||None|Vigan.01G373000.01), UPSTREAM(|4002||None|Vigan.01G373300.01), UPSTREAM(|4655||None|Vigan.01G373100.01), UTR_5_PRIME(|47||None|Vigan.01G373200.01)Vigna nepalensis
51122523TG391581.771.00NON_SYNONYMOUS_CODING(MISSENSE|Tct/Gct|S75A|None|Vigan.01G373200.01), UPSTREAM(|3647||None|Vigan.01G373300.01), UPSTREAM(|3925||None|Vigan.01G373000.01)Vigna nepalensis
51122693GA511955.771.00INTRON(|||None|Vigan.01G373200.01), UPSTREAM(|3477||None|Vigan.01G373300.01), UPSTREAM(|4095||None|Vigan.01G373000.01)Vigna nepalensis
51122905CG421749.771.00INTRON(|||None|Vigan.01G373200.01), SPLICE_SITE_REGION(|||None|Vigan.01G373200.01), UPSTREAM(|3265||None|Vigan.01G373300.01), UPSTREAM(|4307||None|Vigan.01G373000.01)Vigna nepalensis
51123056GT662519.771.00INTRON(|||None|Vigan.01G373200.01), UPSTREAM(|3114||None|Vigan.01G373300.01), UPSTREAM(|4458||None|Vigan.01G373000.01)Vigna nepalensis
51123163TC572316.771.00INTRON(|||None|Vigan.01G373200.01), UPSTREAM(|3007||None|Vigan.01G373300.01), UPSTREAM(|4565||None|Vigan.01G373000.01)Vigna nepalensis
51123174TA592347.771.00INTRON(|||None|Vigan.01G373200.01), UPSTREAM(|2996||None|Vigan.01G373300.01), UPSTREAM(|4576||None|Vigan.01G373000.01)Vigna nepalensis
51123262AG461840.771.00INTRON(|||None|Vigan.01G373200.01), UPSTREAM(|2908||None|Vigan.01G373300.01), UPSTREAM(|4664||None|Vigan.01G373000.01)Vigna nepalensis
51123546AG431878.771.00INTRON(|||None|Vigan.01G373200.01), UPSTREAM(|2624||None|Vigan.01G373300.01), UPSTREAM(|4948||None|Vigan.01G373000.01)Vigna nepalensis
51123547TG462017.731.00INTRON(|||None|Vigan.01G373200.01), UPSTREAM(|2623||None|Vigan.01G373300.01), UPSTREAM(|4949||None|Vigan.01G373000.01)Vigna nepalensis
51123751TG602659.771.00INTRON(|||None|Vigan.01G373200.01), UPSTREAM(|2419||None|Vigan.01G373300.01)Vigna nepalensis
51123752AT602659.771.00INTRON(|||None|Vigan.01G373200.01), UPSTREAM(|2418||None|Vigan.01G373300.01)Vigna nepalensis
51123755TA592626.771.00INTRON(|||None|Vigan.01G373200.01), UPSTREAM(|2415||None|Vigan.01G373300.01)Vigna nepalensis
51123778TC582214.771.00INTRON(|||None|Vigan.01G373200.01), UPSTREAM(|2392||None|Vigan.01G373300.01)Vigna nepalensis
51124205CT562232.771.00INTRON(|||None|Vigan.01G373200.01), UPSTREAM(|1965||None|Vigan.01G373300.01)Vigna nepalensis
51124220CA572152.771.00INTRON(|||None|Vigan.01G373200.01), UPSTREAM(|1950||None|Vigan.01G373300.01)Vigna nepalensis
51124383TC522148.771.00INTRON(|||None|Vigan.01G373200.01), UPSTREAM(|1787||None|Vigan.01G373300.01)Vigna nepalensis
51124422TA401584.771.00INTRON(|||None|Vigan.01G373200.01), SPLICE_SITE_REGION(|||None|Vigan.01G373200.01), UPSTREAM(|1748||None|Vigan.01G373300.01)Vigna nepalensis
51125088TC411618.771.00UPSTREAM(|1082||None|Vigan.01G373300.01), UTR_3_PRIME(|101||None|Vigan.01G373200.01)Vigna nepalensis
51125136GA451957.771.00UPSTREAM(|1034||None|Vigan.01G373300.01), UTR_3_PRIME(|149||None|Vigan.01G373200.01)Vigna nepalensis
51125145GC451994.771.00UPSTREAM(|1025||None|Vigan.01G373300.01), UTR_3_PRIME(|158||None|Vigan.01G373200.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
51122414ACA611944.731.00INTRON(|||None|Vigan.01G373200.01), UPSTREAM(|3755||None|Vigan.01G373300.01), UPSTREAM(|3817||None|Vigan.01G373000.01), UPSTREAM(|4902||None|Vigan.01G373100.01)Vigna nepalensis
51122437AAT511398.731.00INTRON(|||None|Vigan.01G373200.01), UPSTREAM(|3732||None|Vigan.01G373300.01), UPSTREAM(|3840||None|Vigan.01G373000.01), UPSTREAM(|4925||None|Vigan.01G373100.01)Vigna nepalensis
51123075GTG652320.731.00INTRON(|||None|Vigan.01G373200.01), UPSTREAM(|3094||None|Vigan.01G373300.01), UPSTREAM(|4478||None|Vigan.01G373000.01)Vigna nepalensis
51123235ATA561952.731.00INTRON(|||None|Vigan.01G373200.01), UPSTREAM(|2934||None|Vigan.01G373300.01), UPSTREAM(|4638||None|Vigan.01G373000.01)Vigna nepalensis
51123831TTG562220.731.00INTRON(|||None|Vigan.01G373200.01), UPSTREAM(|2338||None|Vigan.01G373300.01)Vigna nepalensis
51124047CCT461459.731.00INTRON(|||None|Vigan.01G373200.01), UPSTREAM(|2122||None|Vigan.01G373300.01)Vigna nepalensis