Variant information

Chr01:50052320 - 50054745

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 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
50052329GT602360.771.00UTR_3_PRIME(|567||None|Vigan.01G364200.01)Vigna nepalensis
50052401CG481958.771.00UTR_3_PRIME(|495||None|Vigan.01G364200.01)Vigna nepalensis
50052537AC532081.771.00UTR_3_PRIME(|359||None|Vigan.01G364200.01)Vigna nepalensis
50053528CA501984.771.00INTRON(|||None|Vigan.01G364200.01)Vigna nepalensis
50053759CA542127.771.00INTRON(|||None|Vigan.01G364200.01)Vigna nepalensis
50054037GC301178.771.00NON_SYNONYMOUS_CODING(MISSENSE|aaC/aaG|N163K|None|Vigan.01G364200.01)Vigna nepalensis
50054175GA421496.771.00SYNONYMOUS_CODING(SILENT|tcC/tcT|S117|None|Vigan.01G364200.01)Vigna nepalensis
50054381AC431686.771.00NON_SYNONYMOUS_CODING(MISSENSE|Tac/Gac|Y49D|None|Vigan.01G364200.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
50052896TTAT451967.731.00FRAME_SHIFT(|taa/|*387|None|Vigan.01G364200.01), STOP_LOST(|taa/|*387|None|Vigan.01G364200.01)Vigna nepalensis
50053699GGA461885.731.00INTRON(|||None|Vigan.01G364200.01)Vigna nepalensis
50054488AAG601958.730.98INTRON(|||None|Vigan.01G364200.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
50054072(GGT)11(GGT)912493.731.00CODON_DELETION(|accacc/|TT150|None|Vigan.01G364200.01)Vigna nepalensis