VIGGS:Variant information

Chr01:49413793 - 49417048

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
49413973	C	T	48	1911.77	1.00	UPSTREAM(\|4032\|\|None\|Vigan.01G359300.01), UPSTREAM(\|4814\|\|None\|Vigan.01G359500.01), UTR_5_PRIME(\|146\|\|None\|Vigan.01G359400.01)	Vigna nepalensis
49414453	A	G	49	1946.77	1.00	INTRON(\|\|\|None\|Vigan.01G359400.01), UPSTREAM(\|4334\|\|None\|Vigan.01G359500.01), UPSTREAM(\|4512\|\|None\|Vigan.01G359300.01)	Vigna nepalensis
49414499	C	T	42	1676.77	1.00	INTRON(\|\|\|None\|Vigan.01G359400.01), UPSTREAM(\|4288\|\|None\|Vigan.01G359500.01), UPSTREAM(\|4558\|\|None\|Vigan.01G359300.01)	Vigna nepalensis
49414730	T	A	47	1815.77	1.00	INTRON(\|\|\|None\|Vigan.01G359400.01), UPSTREAM(\|4057\|\|None\|Vigan.01G359500.01), UPSTREAM(\|4789\|\|None\|Vigan.01G359300.01)	Vigna nepalensis
49415579	T	A	67	2703.77	1.00	INTRON(\|\|\|None\|Vigan.01G359400.01), UPSTREAM(\|3208\|\|None\|Vigan.01G359500.01)	Vigna nepalensis
49415845	A	G	48	1869.77	1.00	INTRON(\|\|\|None\|Vigan.01G359400.01), UPSTREAM(\|2942\|\|None\|Vigan.01G359500.01)	Vigna nepalensis
49416208	G	A	68	2553.77	1.00	SYNONYMOUS_CODING(SILENT\|aaG/aaA\|K107\|None\|Vigan.01G359400.01), UPSTREAM(\|2579\|\|None\|Vigan.01G359500.01)	Vigna nepalensis
49416286	G	A	62	2412.77	1.00	SYNONYMOUS_CODING(SILENT\|aaG/aaA\|K133\|None\|Vigan.01G359400.01), UPSTREAM(\|2501\|\|None\|Vigan.01G359500.01)	Vigna nepalensis
49416484	A	G	57	2265.77	1.00	INTRON(\|\|\|None\|Vigan.01G359400.01), UPSTREAM(\|2303\|\|None\|Vigan.01G359500.01)	Vigna nepalensis
49416712	C	T	58	2341.77	1.00	UPSTREAM(\|2075\|\|None\|Vigan.01G359500.01), UTR_3_PRIME(\|107\|\|None\|Vigan.01G359400.01)	Vigna nepalensis

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
49414335	TTC	T	49	2184.73	1.00	INTRON(\|\|\|None\|Vigan.01G359400.01), UPSTREAM(\|4395\|\|None\|Vigan.01G359300.01), UPSTREAM(\|4451\|\|None\|Vigan.01G359500.01)	Vigna nepalensis
49414345	T	TACTGA	50	2256.73	1.00	INTRON(\|\|\|None\|Vigan.01G359400.01), UPSTREAM(\|4405\|\|None\|Vigan.01G359300.01), UPSTREAM(\|4441\|\|None\|Vigan.01G359500.01)	Vigna nepalensis
49416330	T	TTA	66	2904.73	1.00	INTRON(\|\|\|None\|Vigan.01G359400.01), SPLICE_SITE_REGION(\|\|\|None\|Vigan.01G359400.01), UPSTREAM(\|2456\|\|None\|Vigan.01G359500.01)	Vigna nepalensis
49416375	TA	T	64	2552.73	1.00	INTRON(\|\|\|None\|Vigan.01G359400.01), UPSTREAM(\|2411\|\|None\|Vigan.01G359500.01)	Vigna nepalensis
49416683	T	TAAC	50	2205.73	1.00	UPSTREAM(\|2103\|\|None\|Vigan.01G359500.01), UTR_3_PRIME(\|79\|\|None\|Vigan.01G359400.01)	Vigna nepalensis