Variant information

Chr01:486600 - 491077

Filter



 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
486632AG521975.771.00DOWNSTREAM(|1710||None|Vigan.01G008000.01), UTR_3_PRIME(|313||None|Vigan.01G008100.01)Vigna nepalensis
486793GA481915.771.00DOWNSTREAM(|1871||None|Vigan.01G008000.01), UTR_3_PRIME(|152||None|Vigan.01G008100.01)Vigna nepalensis
487133CG542006.771.00DOWNSTREAM(|2211||None|Vigan.01G008000.01), NON_SYNONYMOUS_CODING(MISSENSE|Gga/Cga|G381R|None|Vigan.01G008100.01)Vigna nepalensis
487189CT431833.771.00DOWNSTREAM(|2267||None|Vigan.01G008000.01), INTRON(|||None|Vigan.01G008100.01)Vigna nepalensis
488101GC562241.771.00DOWNSTREAM(|3179||None|Vigan.01G008000.01), INTRON(|||None|Vigan.01G008100.01), UPSTREAM(|4800||None|Vigan.01G008200.01)Vigna nepalensis
488149GA642513.771.00DOWNSTREAM(|3227||None|Vigan.01G008000.01), INTRON(|||None|Vigan.01G008100.01), UPSTREAM(|4752||None|Vigan.01G008200.01)Vigna nepalensis
488484TC642550.771.00DOWNSTREAM(|3562||None|Vigan.01G008000.01), SPLICE_SITE_REGION(|||None|Vigan.01G008100.01), SYNONYMOUS_CODING(SILENT|gaA/gaG|E241|None|Vigan.01G008100.01), UPSTREAM(|4417||None|Vigan.01G008200.01)Vigna nepalensis
489255TC682742.771.00DOWNSTREAM(|4333||None|Vigan.01G008000.01), INTRON(|||None|Vigan.01G008100.01), UPSTREAM(|3646||None|Vigan.01G008200.01)Vigna nepalensis
489532CT632564.771.00DOWNSTREAM(|4610||None|Vigan.01G008000.01), INTRON(|||None|Vigan.01G008100.01), UPSTREAM(|3369||None|Vigan.01G008200.01)Vigna nepalensis
490540TC421633.771.00INTRON(|||None|Vigan.01G008100.01), UPSTREAM(|2361||None|Vigan.01G008200.01)Vigna nepalensis
490725CG481892.771.00INTRON(|||None|Vigan.01G008100.01), UPSTREAM(|2176||None|Vigan.01G008200.01)Vigna nepalensis
490991GA341316.771.00UPSTREAM(|1910||None|Vigan.01G008200.01), UTR_5_PRIME(|135||None|Vigan.01G008100.01)Vigna nepalensis
491073CA17680.771.00UPSTREAM(|1828||None|Vigan.01G008200.01), UTR_5_PRIME(|217||None|Vigan.01G008100.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
487905AACA622651.731.00DOWNSTREAM(|2984||None|Vigan.01G008000.01), INTRON(|||None|Vigan.01G008100.01), UPSTREAM(|4995||None|Vigan.01G008200.01)Vigna nepalensis
487909TAATCATCAGCAAACTTCAACGTTTAACT632649.731.00DOWNSTREAM(|2988||None|Vigan.01G008000.01), INTRON(|||None|Vigan.01G008100.01), UPSTREAM(|4991||None|Vigan.01G008200.01)Vigna nepalensis
490097AAG652624.731.00INTRON(|||None|Vigan.01G008100.01), UPSTREAM(|2803||None|Vigan.01G008200.01)Vigna nepalensis
490527GAG371016.731.00INTRON(|||None|Vigan.01G008100.01), UPSTREAM(|2373||None|Vigan.01G008200.01)Vigna nepalensis