VIGGS:Variant information

Chr01:45561368 - 45571589

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[SNPs] [Indels]

SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
45561819	T	A	6	39.77	0.50	INTRON(\|\|\|None\|Vigan.01G326900.01)	Vigna nepalensis
45561820	T	A	11	78.77	0.27	INTRON(\|\|\|None\|Vigan.01G326900.01)	Vigna nepalensis
45561822	T	A	12	36.77	0.25	INTRON(\|\|\|None\|Vigan.01G326900.01)	Vigna nepalensis
45561840	T	G	16	644.77	1.00	INTRON(\|\|\|None\|Vigan.01G326900.01)	Vigna nepalensis
45562353	T	C	40	1583.77	1.00	INTRON(\|\|\|None\|Vigan.01G326900.01)	Vigna nepalensis
45562660	T	G	63	2493.77	1.00	INTRON(\|\|\|None\|Vigan.01G326900.01)	Vigna nepalensis
45564453	C	T	49	1990.77	1.00	INTRON(\|\|\|None\|Vigan.01G326900.01)	Vigna nepalensis
45564598	G	A	54	2219.77	1.00	INTRON(\|\|\|None\|Vigan.01G326900.01)	Vigna nepalensis
45564638	C	T	54	2146.77	1.00	INTRON(\|\|\|None\|Vigan.01G326900.01)	Vigna nepalensis
45564871	T	C	58	2357.77	1.00	INTRON(\|\|\|None\|Vigan.01G326900.01)	Vigna nepalensis
45564924	C	T	53	2155.77	1.00	INTRON(\|\|\|None\|Vigan.01G326900.01)	Vigna nepalensis
45565306	A	C	44	1717.77	1.00	INTRON(\|\|\|None\|Vigan.01G326900.01)	Vigna nepalensis
45565649	G	A	51	1980.77	1.00	INTRON(\|\|\|None\|Vigan.01G326900.01)	Vigna nepalensis
45565847	A	T	63	2417.77	1.00	INTRON(\|\|\|None\|Vigan.01G326900.01)	Vigna nepalensis
45566222	G	A	49	1942.77	1.00	INTRON(\|\|\|None\|Vigan.01G326900.01)	Vigna nepalensis
45568026	T	G	52	2079.77	1.00	DOWNSTREAM(\|4063\|\|None\|Vigan.01G327000.01), INTRON(\|\|\|None\|Vigan.01G326900.01)	Vigna nepalensis
45568176	A	G	56	2197.77	1.00	DOWNSTREAM(\|3913\|\|None\|Vigan.01G327000.01), NON_SYNONYMOUS_CODING(MISSENSE\|aAt/aGt\|N244S\|None\|Vigan.01G326900.01)	Vigna nepalensis
45569283	A	G	63	2379.77	0.98	DOWNSTREAM(\|2806\|\|None\|Vigan.01G327000.01), INTRON(\|\|\|None\|Vigan.01G326900.01)	Vigna nepalensis
45571231	G	T	47	1829.77	1.00	DOWNSTREAM(\|858\|\|None\|Vigan.01G327000.01), NON_SYNONYMOUS_CODING(MISSENSE\|gaG/gaT\|E454D\|None\|Vigan.01G326900.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
45561410	TGCACCTTCTGG	T	48	2084.73	1.00	UTR_5_PRIME(\|141\|\|None\|Vigan.01G326900.01)	Vigna nepalensis
45561818	T	TATATATATA	12	72.73	0.33	INTRON(\|\|\|None\|Vigan.01G326900.01)	Vigna nepalensis
45562027	TTTTA	T	32	1366.73	1.00	INTRON(\|\|\|None\|Vigan.01G326900.01)	Vigna nepalensis
45568640	T	TTG	37	1402.73	1.00	DOWNSTREAM(\|3448\|\|None\|Vigan.01G327000.01), INTRON(\|\|\|None\|Vigan.01G326900.01)	Vigna nepalensis
45570044	TA	T	52	1815.73	1.00	DOWNSTREAM(\|2044\|\|None\|Vigan.01G327000.01), INTRON(\|\|\|None\|Vigan.01G326900.01)	Vigna nepalensis