Variant information

Chr01:43898542 - 43906840

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
43898679CT411554.731.00UTR_5_PRIME(|47||None|Vigan.01G310200.01)Vigna nepalensis
43898812TC351335.771.00SYNONYMOUS_CODING(SILENT|gaT/gaC|D29|None|Vigan.01G310200.01)Vigna nepalensis
43898867CT321187.771.00SYNONYMOUS_CODING(SILENT|Ctg/Ttg|L48|None|Vigan.01G310200.01)Vigna nepalensis
43898960CT381467.771.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43899059CT401545.771.00SYNONYMOUS_CODING(SILENT|ccC/ccT|P86|None|Vigan.01G310200.01)Vigna nepalensis
43899108CT431737.771.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43899150TG512044.771.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43899368TA521866.771.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43899448AG532047.771.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43899466CT491856.771.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43899484CG431852.771.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43899492TC381747.771.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43900510GT86635.770.23INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43900730TC62154.770.21INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43900761TG671775.770.67INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43900763GT651775.770.68INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43900988AC25596.770.84INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43901250CA67670.770.40INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43901363AG32300.770.41INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43901384TC29252.770.41INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43901454CA23301.770.48INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43901788TC5172.91.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43901978GT54120.770.13INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43901981CT53120.770.13INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43901992TC50928.770.64INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43902066TC582008.770.97INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43902229TG32498.770.62INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43902303GA1031.770.20INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43902431TC8244.781.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43902471AG14179.770.50INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43902506CA15131.770.33INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43902538GA1235.770.25INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43902672AC301120.771.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43902722AT391448.771.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43902867CT693065.771.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43902874AT703106.771.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43902939AG562205.771.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43903057GT712946.771.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43903282CT481954.771.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43903406GA632377.771.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43903663GA482009.771.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43903808GA572169.771.00SYNONYMOUS_CODING(SILENT|aaG/aaA|K155|None|Vigan.01G310200.01)Vigna nepalensis
43903987GA401509.771.00NON_SYNONYMOUS_CODING(MISSENSE|Gcc/Acc|A188T|None|Vigan.01G310200.01)Vigna nepalensis
43904169AT291366.771.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43904174AC341546.771.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43904219TA431862.771.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43904392TC431876.771.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43904498CT532039.771.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43904542AT582673.771.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43904561TG602702.771.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43904661AC421711.771.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43904699TG441700.771.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43904763CT461913.771.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43904800TG371669.771.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43904837AG301378.771.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43904991GA582567.771.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43904993CG562607.771.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43905002TC572508.771.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43905024GC542068.771.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43905038AG582267.771.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43905077TG622494.771.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43905314TA452031.771.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43905315GA462031.771.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43905631GC632566.771.00INTRON(|||None|Vigan.01G310200.01), UPSTREAM(|4924||None|Vigan.01G310300.01)Vigna nepalensis
43906124AT662536.771.00INTRON(|||None|Vigan.01G310200.01), SPLICE_SITE_REGION(|||None|Vigan.01G310200.01), UPSTREAM(|4431||None|Vigan.01G310300.01)Vigna nepalensis
43906370GA461816.771.00INTRON(|||None|Vigan.01G310200.01), UPSTREAM(|4185||None|Vigan.01G310300.01)Vigna nepalensis
43906471TG522065.771.00INTRON(|||None|Vigan.01G310200.01), UPSTREAM(|4084||None|Vigan.01G310300.01)Vigna nepalensis
43906521TC532088.771.00SYNONYMOUS_CODING(SILENT|gtT/gtC|V315|None|Vigan.01G310200.01), UPSTREAM(|4034||None|Vigan.01G310300.01)Vigna nepalensis
43906656CG481879.771.00UPSTREAM(|3899||None|Vigan.01G310300.01), UTR_3_PRIME(|60||None|Vigan.01G310200.01)Vigna nepalensis
43906723AT471816.771.00UPSTREAM(|3832||None|Vigan.01G310300.01), UTR_3_PRIME(|127||None|Vigan.01G310200.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
43899240GAG611822.731.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43899595AACAACCTTTTTACTTATATATGCAGACACACACATATTTATG22914.731.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43901839CCA1775.730.18INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43901842GGGGA20425.730.60INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43901843GGA2075.730.20INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43902084CCAC75312.730.17INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43902259GGTGACC27151.730.22INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43902301CCA1050.730.30INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43902305GGA850.730.25INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43902632GCG13569.731.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43902634TTCT14569.731.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43903160GTTTGAGTATCCTAAG642843.731.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43904099GTGTATATATATATATATATATATATATATATATATATATATATATATATATATAG281190.731.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43904377ATA391729.731.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43904546GAGATTATATAG572711.731.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43904791TTA401722.731.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43904840CCA311431.731.00INTRON(|||None|Vigan.01G310200.01)Vigna nepalensis
43906826CAATTTATATCAGATATATTTATAATAAC351495.731.00DOWNSTREAM(|0||None|Vigan.01G310200.01), INTERGENIC(||||), INTRAGENIC(|||None|), UPSTREAM(|3728||None|Vigan.01G310300.01), UTR_3_PRIME(|231||None|Vigan.01G310200.01)Vigna nepalensis