VIGGS:Variant information

Chr01:42957447 - 42959278

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
42957480	T	A	61	2456.77	1.00	DOWNSTREAM(\|3614\|\|None\|Vigan.01G303100.01), UTR_5_PRIME(\|526\|\|None\|Vigan.01G303000.01)	Vigna nepalensis
42957651	G	A	63	2533.77	1.00	DOWNSTREAM(\|3443\|\|None\|Vigan.01G303100.01), UTR_5_PRIME(\|355\|\|None\|Vigan.01G303000.01)	Vigna nepalensis
42957813	G	C	58	2300.77	1.00	DOWNSTREAM(\|3281\|\|None\|Vigan.01G303100.01), UTR_5_PRIME(\|193\|\|None\|Vigan.01G303000.01)	Vigna nepalensis
42957947	G	A	60	2687.77	1.00	DOWNSTREAM(\|3147\|\|None\|Vigan.01G303100.01), START_GAINED(\|\|\|None\|Vigan.01G303000.01), UTR_5_PRIME(\|59\|\|None\|Vigan.01G303000.01)	Vigna nepalensis
42958146	A	G	38	1454.77	1.00	DOWNSTREAM(\|2948\|\|None\|Vigan.01G303100.01), SYNONYMOUS_CODING(SILENT\|ggA/ggG\|G47\|None\|Vigan.01G303000.01)	Vigna nepalensis

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
42957802	C	CTGTAGCTTTCTTAATCTCTAGATGTAACTCTTCATGA	55	3346.73	1.00	DOWNSTREAM(\|3291\|\|None\|Vigan.01G303100.01), UTR_5_PRIME(\|203\|\|None\|Vigan.01G303000.01)	Vigna nepalensis
42957939	AGT	A	60	2688.73	1.00	DOWNSTREAM(\|3154\|\|None\|Vigan.01G303100.01), UTR_5_PRIME(\|65\|\|None\|Vigan.01G303000.01)	Vigna nepalensis
42958715	CGTTTAATTAAAGTGT	C	67	2961.73	1.00	DOWNSTREAM(\|2378\|\|None\|Vigan.01G303100.01), INTRON(\|\|\|None\|Vigan.01G303000.01)	Vigna nepalensis
42959032	CTCTCATGGT	C	47	2019.73	1.00	CODON_DELETION(\|tctcatggt/\|SHG130\|None\|Vigan.01G303000.01), DOWNSTREAM(\|2061\|\|None\|Vigan.01G303100.01)	Vigna nepalensis
42959092	GAAGTTCAAGCAGCATGGACATGGC	G	28	1183.73	1.00	CODON_DELETION(\|aagttcaagcagcatggacatggc/\|KFKQHGHG150\|None\|Vigan.01G303000.01), DOWNSTREAM(\|2001\|\|None\|Vigan.01G303100.01)	Vigna nepalensis