VIGGS:Variant information

Chr01:42083758 - 42088572

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
42084451	C	T	38	1408.77	1.00	SYNONYMOUS_CODING(SILENT\|ctC/ctT\|L91\|None\|Vigan.01G295300.01)	Vigna nepalensis
42084481	G	A	40	1452.77	1.00	SYNONYMOUS_CODING(SILENT\|gtG/gtA\|V101\|None\|Vigan.01G295300.01)	Vigna nepalensis
42085744	T	A	66	2697.77	1.00	INTRON(\|\|\|None\|Vigan.01G295300.01)	Vigna nepalensis
42085813	T	A	65	2767.77	1.00	INTRON(\|\|\|None\|Vigan.01G295300.01)	Vigna nepalensis
42086332	C	T	74	2835.77	1.00	INTRON(\|\|\|None\|Vigan.01G295300.01)	Vigna nepalensis
42087240	A	C	59	2313.77	1.00	INTRON(\|\|\|None\|Vigan.01G295300.01)	Vigna nepalensis
42087397	C	G	73	2941.77	1.00	INTRON(\|\|\|None\|Vigan.01G295300.01)	Vigna nepalensis
42087484	A	G	58	2573.77	1.00	INTRON(\|\|\|None\|Vigan.01G295300.01)	Vigna nepalensis
42087506	T	A	58	2509.77	1.00	INTRON(\|\|\|None\|Vigan.01G295300.01)	Vigna nepalensis
42087889	T	A	50	2054.77	1.00	INTRON(\|\|\|None\|Vigan.01G295300.01)	Vigna nepalensis
42088021	A	C	53	2066.77	1.00	INTRON(\|\|\|None\|Vigan.01G295300.01)	Vigna nepalensis
42088569	G	T	49	2191.77	1.00	UTR_3_PRIME(\|977\|\|None\|Vigan.01G295300.01)	Vigna nepalensis
42088570	C	T	49	2191.77	1.00	UTR_3_PRIME(\|978\|\|None\|Vigan.01G295300.01)	Vigna nepalensis

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
42083937	TTCTCTCTCTCCGTTTCTCTTTTCTCTTTTCTCTCCTTCTCTCTCTCTCCGTTTCTCTTTTCTCTTTTCTCTCCTTC	T	40	982.73	1.00	UTR_5_PRIME(\|166\|\|None\|Vigan.01G295300.01)	Vigna nepalensis