Variant information

Chr01:40400131 - 40404709

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
40400229AC632446.771.00UTR_3_PRIME(|1045||None|Vigan.01G283700.01)Vigna nepalensis
40400521CT481823.771.00UTR_3_PRIME(|753||None|Vigan.01G283700.01)Vigna nepalensis
40400590AT682586.771.00UTR_3_PRIME(|684||None|Vigan.01G283700.01)Vigna nepalensis
40400813AG511989.771.00UTR_3_PRIME(|461||None|Vigan.01G283700.01)Vigna nepalensis
40401429GT451716.771.00NON_SYNONYMOUS_CODING(MISSENSE|Cta/Ata|L341I|None|Vigan.01G283700.01)Vigna nepalensis
40401906AT502031.771.00INTRON(|||None|Vigan.01G283700.01)Vigna nepalensis
40402297TG562277.771.00INTRON(|||None|Vigan.01G283700.01)Vigna nepalensis
40402718TC451737.771.00SYNONYMOUS_CODING(SILENT|gcA/gcG|A115|None|Vigan.01G283700.01)Vigna nepalensis
40403052CA702839.771.00INTRON(|||None|Vigan.01G283700.01)Vigna nepalensis
40403454CA251042.771.00INTRON(|||None|Vigan.01G283700.01)Vigna nepalensis
40403527AC311233.771.00INTRON(|||None|Vigan.01G283700.01)Vigna nepalensis
40403554AG341333.771.00INTRON(|||None|Vigan.01G283700.01)Vigna nepalensis
40403605CT411465.771.00INTRON(|||None|Vigan.01G283700.01)Vigna nepalensis
40403721GA431751.771.00INTRON(|||None|Vigan.01G283700.01)Vigna nepalensis
40403771CT471628.771.00INTRON(|||None|Vigan.01G283700.01)Vigna nepalensis
40403801CA552031.771.00INTRON(|||None|Vigan.01G283700.01)Vigna nepalensis
40403843CT622738.771.00INTRON(|||None|Vigan.01G283700.01)Vigna nepalensis
40403864CG602851.771.00INTRON(|||None|Vigan.01G283700.01)Vigna nepalensis
40403868GT612806.771.00INTRON(|||None|Vigan.01G283700.01)Vigna nepalensis
40403870GT622761.771.00INTRON(|||None|Vigan.01G283700.01)Vigna nepalensis
40403902AC602671.771.00INTRON(|||None|Vigan.01G283700.01)Vigna nepalensis
40403924GC542671.771.00INTRON(|||None|Vigan.01G283700.01)Vigna nepalensis
40403938GA522401.771.00INTRON(|||None|Vigan.01G283700.01)Vigna nepalensis
40403975CA512401.771.00INTRON(|||None|Vigan.01G283700.01)Vigna nepalensis
40403989GA552483.771.00INTRON(|||None|Vigan.01G283700.01)Vigna nepalensis
40403991AC552482.771.00INTRON(|||None|Vigan.01G283700.01)Vigna nepalensis
40404059CA572585.771.00INTRON(|||None|Vigan.01G283700.01)Vigna nepalensis
40404152CT723163.771.00INTRON(|||None|Vigan.01G283700.01)Vigna nepalensis
40404321GA723168.771.00INTRON(|||None|Vigan.01G283700.01)Vigna nepalensis
40404426GA532285.771.00SYNONYMOUS_CODING(SILENT|ctC/ctT|L32|None|Vigan.01G283700.01)Vigna nepalensis
40404450GA492104.771.00SYNONYMOUS_CODING(SILENT|ccC/ccT|P24|None|Vigan.01G283700.01)Vigna nepalensis
40404542GT592295.771.00UTR_5_PRIME(|21||None|Vigan.01G283700.01)Vigna nepalensis
40404565AC612359.771.00UTR_5_PRIME(|44||None|Vigan.01G283700.01)Vigna nepalensis
40404606GA582299.771.00UTR_5_PRIME(|85||None|Vigan.01G283700.01)Vigna nepalensis
40404662CT492128.771.00UTR_5_PRIME(|141||None|Vigan.01G283700.01)Vigna nepalensis
40404666GC482126.771.00START_GAINED(|||None|Vigan.01G283700.01), UTR_5_PRIME(|145||None|Vigan.01G283700.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
40402068AAT531421.730.98INTRON(|||None|Vigan.01G283700.01)Vigna nepalensis
40403954CCT493607.731.00INTRON(|||None|Vigan.01G283700.01)Vigna nepalensis
40403955GGAGAACCCGCGAAAATTTTCCAGACAAAAAAAAAAGTTAGAAAC493652.731.00INTRON(|||None|Vigan.01G283700.01)Vigna nepalensis
40404052AAGGGCA582576.731.00INTRON(|||None|Vigan.01G283700.01)Vigna nepalensis
40404062ACCA553112.731.00INTRON(|||None|Vigan.01G283700.01)Vigna nepalensis
40404064CCTTGAATGAAATT552977.731.00INTRON(|||None|Vigan.01G283700.01)Vigna nepalensis
40404142GAG642958.731.00INTRON(|||None|Vigan.01G283700.01)Vigna nepalensis
40404316GGA653035.731.00INTRON(|||None|Vigan.01G283700.01)Vigna nepalensis