VIGGS:Variant information

Chr01:3136349 - 3141081

Filter

Species
- Vigna nepalensis
Effect
- DOWNSTREAM
- INTRON
- SPLICE_SITE_REGION

[SNPs] [Indels]

SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
3137165	C	A	48	2086.77	1.00	INTRON(\|\|\|None\|Vigan.01G043200.01)	Vigna nepalensis
3137189	C	A	54	2491.77	1.00	INTRON(\|\|\|None\|Vigan.01G043200.01)	Vigna nepalensis
3137191	A	G	53	2536.77	1.00	INTRON(\|\|\|None\|Vigan.01G043200.01)	Vigna nepalensis
3137200	A	G	57	2625.77	1.00	INTRON(\|\|\|None\|Vigan.01G043200.01)	Vigna nepalensis
3137211	T	C	54	2397.77	1.00	INTRON(\|\|\|None\|Vigan.01G043200.01)	Vigna nepalensis
3137255	C	T	50	2221.77	1.00	INTRON(\|\|\|None\|Vigan.01G043200.01)	Vigna nepalensis
3137257	G	C	50	2221.77	1.00	INTRON(\|\|\|None\|Vigan.01G043200.01)	Vigna nepalensis
3137283	G	C	44	1770.77	1.00	INTRON(\|\|\|None\|Vigan.01G043200.01)	Vigna nepalensis
3137839	C	G	57	2341.77	1.00	INTRON(\|\|\|None\|Vigan.01G043200.01)	Vigna nepalensis
3138303	T	G	53	2036.77	1.00	INTRON(\|\|\|None\|Vigan.01G043200.01), SPLICE_SITE_REGION(\|\|\|None\|Vigan.01G043200.01)	Vigna nepalensis
3138897	A	G	61	2399.77	1.00	DOWNSTREAM(\|4718\|\|None\|Vigan.01G043300.01), INTRON(\|\|\|None\|Vigan.01G043200.01)	Vigna nepalensis
3139292	C	G	60	2400.77	1.00	DOWNSTREAM(\|4323\|\|None\|Vigan.01G043300.01), INTRON(\|\|\|None\|Vigan.01G043200.01)	Vigna nepalensis
3139903	T	A	65	2727.77	1.00	DOWNSTREAM(\|3712\|\|None\|Vigan.01G043300.01), INTRON(\|\|\|None\|Vigan.01G043200.01)	Vigna nepalensis
3140017	T	G	62	2432.77	1.00	DOWNSTREAM(\|3598\|\|None\|Vigan.01G043300.01), INTRON(\|\|\|None\|Vigan.01G043200.01)	Vigna nepalensis
3140143	G	A	60	2407.77	1.00	DOWNSTREAM(\|3472\|\|None\|Vigan.01G043300.01), INTRON(\|\|\|None\|Vigan.01G043200.01)	Vigna nepalensis
3140408	G	A	58	2226.77	1.00	DOWNSTREAM(\|3207\|\|None\|Vigan.01G043300.01), INTRON(\|\|\|None\|Vigan.01G043200.01), SPLICE_SITE_REGION(\|\|\|None\|Vigan.01G043200.01)	Vigna nepalensis
3140495	C	G	44	1784.77	1.00	DOWNSTREAM(\|3120\|\|None\|Vigan.01G043300.01), INTRON(\|\|\|None\|Vigan.01G043200.01)	Vigna nepalensis
3140611	T	C	49	1850.77	1.00	DOWNSTREAM(\|3004\|\|None\|Vigan.01G043300.01), INTRON(\|\|\|None\|Vigan.01G043200.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
3140451	T	TCA	48	2200.73	1.00	DOWNSTREAM(\|3163\|\|None\|Vigan.01G043300.01), INTRON(\|\|\|None\|Vigan.01G043200.01)	Vigna nepalensis