Variant information

Chr01:3105654 - 3113270

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 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
3105933AG512040.771.00SYNONYMOUS_CODING(SILENT|tcT/tcC|S574|None|Vigan.01G042800.01), UPSTREAM(|2330||None|Vigan.01G042700.01)Vigna nepalensis
3106024AG612386.771.00INTRON(|||None|Vigan.01G042800.01), UPSTREAM(|2421||None|Vigan.01G042700.01)Vigna nepalensis
3106104TC562285.771.00INTRON(|||None|Vigan.01G042800.01), UPSTREAM(|2501||None|Vigan.01G042700.01)Vigna nepalensis
3106179GT512072.771.00INTRON(|||None|Vigan.01G042800.01), UPSTREAM(|2576||None|Vigan.01G042700.01)Vigna nepalensis
3106215AG622496.771.00INTRON(|||None|Vigan.01G042800.01), UPSTREAM(|2612||None|Vigan.01G042700.01)Vigna nepalensis
3106274TG662573.771.00INTRON(|||None|Vigan.01G042800.01), UPSTREAM(|2671||None|Vigan.01G042700.01)Vigna nepalensis
3106307CT602441.771.00INTRON(|||None|Vigan.01G042800.01), SPLICE_SITE_REGION(|||None|Vigan.01G042800.01), UPSTREAM(|2704||None|Vigan.01G042700.01)Vigna nepalensis
3106471AT502043.771.00INTRON(|||None|Vigan.01G042800.01), UPSTREAM(|2868||None|Vigan.01G042700.01)Vigna nepalensis
3106736AG451826.771.00SYNONYMOUS_CODING(SILENT|ctT/ctC|L465|None|Vigan.01G042800.01), UPSTREAM(|3133||None|Vigan.01G042700.01)Vigna nepalensis
3107130TC612358.771.00INTRON(|||None|Vigan.01G042800.01), UPSTREAM(|3527||None|Vigan.01G042700.01)Vigna nepalensis
3107214CG612376.770.98INTRON(|||None|Vigan.01G042800.01), UPSTREAM(|3611||None|Vigan.01G042700.01)Vigna nepalensis
3107405AC552203.771.00INTRON(|||None|Vigan.01G042800.01), UPSTREAM(|3802||None|Vigan.01G042700.01)Vigna nepalensis
3107641CA592422.771.00INTRON(|||None|Vigan.01G042800.01), UPSTREAM(|4038||None|Vigan.01G042700.01)Vigna nepalensis
3107701AT612468.771.00INTRON(|||None|Vigan.01G042800.01), UPSTREAM(|4098||None|Vigan.01G042700.01)Vigna nepalensis
3107762CA552176.771.00INTRON(|||None|Vigan.01G042800.01), UPSTREAM(|4159||None|Vigan.01G042700.01)Vigna nepalensis
3107829CT522161.771.00INTRON(|||None|Vigan.01G042800.01), UPSTREAM(|4226||None|Vigan.01G042700.01)Vigna nepalensis
3107860GA552303.771.00INTRON(|||None|Vigan.01G042800.01), UPSTREAM(|4257||None|Vigan.01G042700.01)Vigna nepalensis
3107908GA592453.771.00SYNONYMOUS_CODING(SILENT|caC/caT|H438|None|Vigan.01G042800.01), UPSTREAM(|4305||None|Vigan.01G042700.01)Vigna nepalensis
3108208TC532072.771.00INTRON(|||None|Vigan.01G042800.01), UPSTREAM(|4605||None|Vigan.01G042700.01)Vigna nepalensis
3108540GA451949.771.00INTRON(|||None|Vigan.01G042800.01), UPSTREAM(|4937||None|Vigan.01G042700.01)Vigna nepalensis
3108550CG391726.771.00INTRON(|||None|Vigan.01G042800.01), UPSTREAM(|4947||None|Vigan.01G042700.01)Vigna nepalensis
3108572CT472149.771.00INTRON(|||None|Vigan.01G042800.01), UPSTREAM(|4969||None|Vigan.01G042700.01)Vigna nepalensis
3108678TA461818.771.00INTRON(|||None|Vigan.01G042800.01)Vigna nepalensis
3109100GA532156.771.00INTRON(|||None|Vigan.01G042800.01)Vigna nepalensis
3109341AT462008.731.00INTRON(|||None|Vigan.01G042800.01)Vigna nepalensis
3109414TC592414.771.00INTRON(|||None|Vigan.01G042800.01)Vigna nepalensis
3109650AG532155.771.00INTRON(|||None|Vigan.01G042800.01)Vigna nepalensis
3109717AT431764.771.00INTRON(|||None|Vigan.01G042800.01)Vigna nepalensis
3109806AG451842.771.00INTRON(|||None|Vigan.01G042800.01)Vigna nepalensis
3109898AT642403.771.00INTRON(|||None|Vigan.01G042800.01)Vigna nepalensis
3109970GT572248.771.00INTRON(|||None|Vigan.01G042800.01)Vigna nepalensis
3110094CT522315.771.00INTRON(|||None|Vigan.01G042800.01)Vigna nepalensis
3110106AG552437.771.00INTRON(|||None|Vigan.01G042800.01)Vigna nepalensis
3110233TG773441.771.00INTRON(|||None|Vigan.01G042800.01)Vigna nepalensis
3110236GA773449.771.00INTRON(|||None|Vigan.01G042800.01)Vigna nepalensis
3110505TC562519.771.00INTRON(|||None|Vigan.01G042800.01)Vigna nepalensis
3110585TC572245.771.00INTRON(|||None|Vigan.01G042800.01)Vigna nepalensis
3110775TA693012.771.00INTRON(|||None|Vigan.01G042800.01)Vigna nepalensis
3110914GA622566.771.00INTRON(|||None|Vigan.01G042800.01)Vigna nepalensis
3111000AC592353.771.00INTRON(|||None|Vigan.01G042800.01)Vigna nepalensis
3111122TC471993.771.00INTRON(|||None|Vigan.01G042800.01)Vigna nepalensis
3111187GA582410.771.00INTRON(|||None|Vigan.01G042800.01)Vigna nepalensis
3111530CT562504.771.00INTRON(|||None|Vigan.01G042800.01)Vigna nepalensis
3111777AC582214.771.00INTRON(|||None|Vigan.01G042800.01)Vigna nepalensis
3111910CT572330.771.00INTRON(|||None|Vigan.01G042800.01)Vigna nepalensis
3112178GA652560.771.00INTRON(|||None|Vigan.01G042800.01)Vigna nepalensis
3112438GA672618.771.00INTRON(|||None|Vigan.01G042800.01), SPLICE_SITE_REGION(|||None|Vigan.01G042800.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
3106125GGAA512281.731.00INTRON(|||None|Vigan.01G042800.01), UPSTREAM(|2523||None|Vigan.01G042700.01)Vigna nepalensis
3107312CAC501681.731.00INTRON(|||None|Vigan.01G042800.01), UPSTREAM(|3710||None|Vigan.01G042700.01)Vigna nepalensis
3109061CTTTTAC562464.731.00INTRON(|||None|Vigan.01G042800.01)Vigna nepalensis
3109333AGA391687.731.00INTRON(|||None|Vigan.01G042800.01), SPLICE_SITE_REGION(|||None|Vigan.01G042800.01)Vigna nepalensis
3109339AATAT391687.731.00INTRON(|||None|Vigan.01G042800.01)Vigna nepalensis
3109762CCT391527.731.00INTRON(|||None|Vigan.01G042800.01)Vigna nepalensis
3110509AATG572578.731.00INTRON(|||None|Vigan.01G042800.01)Vigna nepalensis
3110784CCAAT602913.731.00INTRON(|||None|Vigan.01G042800.01)Vigna nepalensis
3111543GGTATA602838.731.00INTRON(|||None|Vigan.01G042800.01)Vigna nepalensis
3111793AGA542138.731.00INTRON(|||None|Vigan.01G042800.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
3111524(AC)9(AC)8532405.731.00INTRON(|||None|Vigan.01G042800.01)Vigna nepalensis