Variant information

Chr01:3020011 - 3022428

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 [SNPs] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
3020288AT562074.771.00DOWNSTREAM(|2215||None|Vigan.01G041600.01), UPSTREAM(|4845||None|Vigan.01G041300.01), UTR_5_PRIME(|276||None|Vigan.01G041500.01)Vigna nepalensis
3020466GA501950.771.00DOWNSTREAM(|2037||None|Vigan.01G041600.01), UTR_5_PRIME(|98||None|Vigan.01G041500.01)Vigna nepalensis
3020572TC532122.771.00DOWNSTREAM(|1931||None|Vigan.01G041600.01), SYNONYMOUS_CODING(SILENT|aaT/aaC|N3|None|Vigan.01G041500.01)Vigna nepalensis
3021282CG692765.771.00DOWNSTREAM(|1221||None|Vigan.01G041600.01), DOWNSTREAM(|4537||None|Vigan.01G041700.01), INTRON(|||None|Vigan.01G041500.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
3020180(CT)11(CT)1225844.730.96DOWNSTREAM(|2322||None|Vigan.01G041600.01), UPSTREAM(|4738||None|Vigan.01G041300.01), UTR_5_PRIME(|383||None|Vigan.01G041500.01)Vigna nepalensis