Variant information

Chr01:27965904 - 27974409

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
27966132CT602337.771.00DOWNSTREAM(|3079||None|Vigan.01G213900.01), START_GAINED(|||None|Vigan.01G214000.01), UPSTREAM(|4901||None|Vigan.01G214100.01), UTR_5_PRIME(|238||None|Vigan.01G214000.01)Vigna nepalensis
27966969GA502192.771.00DOWNSTREAM(|3916||None|Vigan.01G213900.01), SYNONYMOUS_CODING(SILENT|gaG/gaA|E200|None|Vigan.01G214000.01), UPSTREAM(|4064||None|Vigan.01G214100.01)Vigna nepalensis
27966973CA502186.771.00DOWNSTREAM(|3920||None|Vigan.01G213900.01), NON_SYNONYMOUS_CODING(MISSENSE|Ctt/Att|L202I|None|Vigan.01G214000.01), UPSTREAM(|4060||None|Vigan.01G214100.01)Vigna nepalensis
27967766AG321411.771.00DOWNSTREAM(|4713||None|Vigan.01G213900.01), INTRON(|||None|Vigan.01G214000.01), UPSTREAM(|3267||None|Vigan.01G214100.01)Vigna nepalensis
27967846CT461972.771.00DOWNSTREAM(|4793||None|Vigan.01G213900.01), INTRON(|||None|Vigan.01G214000.01), UPSTREAM(|3187||None|Vigan.01G214100.01)Vigna nepalensis
27968071GA472033.771.00INTRON(|||None|Vigan.01G214000.01), UPSTREAM(|2962||None|Vigan.01G214100.01)Vigna nepalensis
27968081TC452030.771.00INTRON(|||None|Vigan.01G214000.01), UPSTREAM(|2952||None|Vigan.01G214100.01)Vigna nepalensis
27968185GT461778.771.00INTRON(|||None|Vigan.01G214000.01), UPSTREAM(|2848||None|Vigan.01G214100.01)Vigna nepalensis
27968335CG642573.771.00INTRON(|||None|Vigan.01G214000.01), UPSTREAM(|2698||None|Vigan.01G214100.01)Vigna nepalensis
27968491AG672497.771.00INTRON(|||None|Vigan.01G214000.01), UPSTREAM(|2542||None|Vigan.01G214100.01)Vigna nepalensis
27968610GA652977.771.00INTRON(|||None|Vigan.01G214000.01), UPSTREAM(|2423||None|Vigan.01G214100.01)Vigna nepalensis
27968612CT662977.771.00INTRON(|||None|Vigan.01G214000.01), UPSTREAM(|2421||None|Vigan.01G214100.01)Vigna nepalensis
27968613AT652941.771.00INTRON(|||None|Vigan.01G214000.01), UPSTREAM(|2420||None|Vigan.01G214100.01)Vigna nepalensis
27968728TC572292.771.00INTRON(|||None|Vigan.01G214000.01), UPSTREAM(|2305||None|Vigan.01G214100.01)Vigna nepalensis
27968891GC501993.771.00INTRON(|||None|Vigan.01G214000.01), UPSTREAM(|2142||None|Vigan.01G214100.01)Vigna nepalensis
27969188AG572692.771.00INTRON(|||None|Vigan.01G214000.01), UPSTREAM(|1845||None|Vigan.01G214100.01)Vigna nepalensis
27969191CT612692.771.00INTRON(|||None|Vigan.01G214000.01), UPSTREAM(|1842||None|Vigan.01G214100.01)Vigna nepalensis
27969256TC612448.771.00INTRON(|||None|Vigan.01G214000.01), UPSTREAM(|1777||None|Vigan.01G214100.01)Vigna nepalensis
27969309AG491969.771.00INTRON(|||None|Vigan.01G214000.01), UPSTREAM(|1724||None|Vigan.01G214100.01)Vigna nepalensis
27969620CT572223.771.00INTRON(|||None|Vigan.01G214000.01), UPSTREAM(|1413||None|Vigan.01G214100.01)Vigna nepalensis
27970437AG411633.771.00DOWNSTREAM(|4901||None|Vigan.01G214200.01), INTRON(|||None|Vigan.01G214000.01), UPSTREAM(|596||None|Vigan.01G214100.01)Vigna nepalensis
27970567AG532165.771.00DOWNSTREAM(|4771||None|Vigan.01G214200.01), INTRON(|||None|Vigan.01G214000.01), UPSTREAM(|466||None|Vigan.01G214100.01)Vigna nepalensis
27970635AG562215.771.00DOWNSTREAM(|4703||None|Vigan.01G214200.01), INTRON(|||None|Vigan.01G214000.01), UPSTREAM(|398||None|Vigan.01G214100.01)Vigna nepalensis
27971048AG652720.771.00DOWNSTREAM(|4290||None|Vigan.01G214200.01), EXON(|||None|Vigan.01G214100.01), INTRON(|||None|Vigan.01G214000.01)Vigna nepalensis
27971165CT642627.771.00DOWNSTREAM(|4173||None|Vigan.01G214200.01), EXON(|||None|Vigan.01G214100.01), INTRON(|||None|Vigan.01G214000.01)Vigna nepalensis
27971594GA612598.771.00DOWNSTREAM(|3744||None|Vigan.01G214200.01), EXON(|||None|Vigan.01G214100.01), INTRON(|||None|Vigan.01G214000.01)Vigna nepalensis
27971618GA632682.771.00DOWNSTREAM(|3720||None|Vigan.01G214200.01), EXON(|||None|Vigan.01G214100.01), INTRON(|||None|Vigan.01G214000.01)Vigna nepalensis
27972043AG291146.771.00DOWNSTREAM(|3295||None|Vigan.01G214200.01), EXON(|||None|Vigan.01G214100.01), INTRON(|||None|Vigan.01G214000.01)Vigna nepalensis
27972177GA311345.771.00DOWNSTREAM(|3161||None|Vigan.01G214200.01), EXON(|||None|Vigan.01G214100.01), INTRON(|||None|Vigan.01G214000.01)Vigna nepalensis
27972257CT421644.771.00DOWNSTREAM(|3081||None|Vigan.01G214200.01), EXON(|||None|Vigan.01G214100.01), INTRON(|||None|Vigan.01G214000.01)Vigna nepalensis
27972379GA491987.771.00DOWNSTREAM(|2959||None|Vigan.01G214200.01), EXON(|||None|Vigan.01G214100.01), INTRON(|||None|Vigan.01G214000.01)Vigna nepalensis
27972440AG411764.771.00DOWNSTREAM(|2898||None|Vigan.01G214200.01), DOWNSTREAM(|44||None|Vigan.01G214100.01), INTRON(|||None|Vigan.01G214000.01)Vigna nepalensis
27972471CT441898.771.00DOWNSTREAM(|2867||None|Vigan.01G214200.01), DOWNSTREAM(|75||None|Vigan.01G214100.01), INTRON(|||None|Vigan.01G214000.01)Vigna nepalensis
27972642GT582377.771.00DOWNSTREAM(|246||None|Vigan.01G214100.01), DOWNSTREAM(|2696||None|Vigan.01G214200.01), INTRON(|||None|Vigan.01G214000.01)Vigna nepalensis
27972689GA652315.771.00DOWNSTREAM(|2649||None|Vigan.01G214200.01), DOWNSTREAM(|293||None|Vigan.01G214100.01), INTRON(|||None|Vigan.01G214000.01)Vigna nepalensis
27972748GA562255.771.00DOWNSTREAM(|2590||None|Vigan.01G214200.01), DOWNSTREAM(|352||None|Vigan.01G214100.01), INTRON(|||None|Vigan.01G214000.01)Vigna nepalensis
27972834CT592331.771.00DOWNSTREAM(|2504||None|Vigan.01G214200.01), DOWNSTREAM(|438||None|Vigan.01G214100.01), INTRON(|||None|Vigan.01G214000.01)Vigna nepalensis
27973641AG501843.771.00DOWNSTREAM(|1245||None|Vigan.01G214100.01), DOWNSTREAM(|1697||None|Vigan.01G214200.01), INTRON(|||None|Vigan.01G214000.01)Vigna nepalensis
27973887TA562222.771.00DOWNSTREAM(|1451||None|Vigan.01G214200.01), DOWNSTREAM(|1491||None|Vigan.01G214100.01), UTR_3_PRIME(|28||None|Vigan.01G214000.01)Vigna nepalensis
27973919AG642541.771.00DOWNSTREAM(|1419||None|Vigan.01G214200.01), DOWNSTREAM(|1523||None|Vigan.01G214100.01), UTR_3_PRIME(|60||None|Vigan.01G214000.01)Vigna nepalensis
27974318GC552224.771.00DOWNSTREAM(|1020||None|Vigan.01G214200.01), DOWNSTREAM(|1922||None|Vigan.01G214100.01), UTR_3_PRIME(|459||None|Vigan.01G214000.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
27966828AAGAG22907.731.00CODON_INSERTION(|gag/GAGgag|E154EE|None|Vigan.01G214000.01), DOWNSTREAM(|3776||None|Vigan.01G213900.01), UPSTREAM(|4204||None|Vigan.01G214100.01)Vigna nepalensis
27967757CCGT351364.730.97DOWNSTREAM(|4705||None|Vigan.01G213900.01), INTRON(|||None|Vigan.01G214000.01), UPSTREAM(|3275||None|Vigan.01G214100.01)Vigna nepalensis
27967800GTATAG351623.731.00DOWNSTREAM(|4748||None|Vigan.01G213900.01), INTRON(|||None|Vigan.01G214000.01), UPSTREAM(|3232||None|Vigan.01G214100.01)Vigna nepalensis
27969027GGGTA512231.731.00INTRON(|||None|Vigan.01G214000.01), UPSTREAM(|2005||None|Vigan.01G214100.01)Vigna nepalensis
27972119GTAGAGGAGAAGAAGAAGAGCACCGAATGGTGGAAGGCGAG361606.731.00DOWNSTREAM(|3218||None|Vigan.01G214200.01), EXON(|||None|Vigan.01G214100.01), INTRON(|||None|Vigan.01G214000.01)Vigna nepalensis
27973606TTTTGGGAATTGTGAACAGTTTATAGGAATTAATTTCTCTTAAAATGCA292092.731.00DOWNSTREAM(|1211||None|Vigan.01G214100.01), DOWNSTREAM(|1731||None|Vigan.01G214200.01), INTRON(|||None|Vigan.01G214000.01)Vigna nepalensis