Variant information

Chr01:2560784 - 2565141

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
2561378AG441931.771.00UTR_5_PRIME(|126||None|Vigan.01G036700.01)Vigna nepalensis
2561384CA431906.771.00UTR_5_PRIME(|120||None|Vigan.01G036700.01)Vigna nepalensis
2561885CT511925.771.00INTRON(|||None|Vigan.01G036700.01)Vigna nepalensis
2561898TC461734.771.00INTRON(|||None|Vigan.01G036700.01)Vigna nepalensis
2562245TC71697.770.31INTRON(|||None|Vigan.01G036700.01)Vigna nepalensis
2562257GA68711.770.31INTRON(|||None|Vigan.01G036700.01)Vigna nepalensis
2562259CA67708.770.31INTRON(|||None|Vigan.01G036700.01)Vigna nepalensis
2562272CG64666.770.30INTRON(|||None|Vigan.01G036700.01), SPLICE_SITE_REGION(|||None|Vigan.01G036700.01)Vigna nepalensis
2562280GA61582.770.25SYNONYMOUS_CODING(SILENT|aaG/aaA|K116|None|Vigan.01G036700.01)Vigna nepalensis
2562564TC552013.771.00SYNONYMOUS_CODING(SILENT|Ttg/Ctg|L178|None|Vigan.01G036700.01)Vigna nepalensis
2562708TC681010.770.40SYNONYMOUS_CODING(SILENT|Ttg/Ctg|L226|None|Vigan.01G036700.01)Vigna nepalensis
2562713TA721030.770.40SYNONYMOUS_CODING(SILENT|acT/acA|T227|None|Vigan.01G036700.01)Vigna nepalensis
2562753CT941668.770.57NON_SYNONYMOUS_CODING(MISSENSE|Cct/Tct|P241S|None|Vigan.01G036700.01)Vigna nepalensis
2562838TC1001881.770.58NON_SYNONYMOUS_CODING(MISSENSE|cTa/cCa|L269P|None|Vigan.01G036700.01)Vigna nepalensis
2562863GA921622.770.53SYNONYMOUS_CODING(SILENT|gaG/gaA|E277|None|Vigan.01G036700.01)Vigna nepalensis
2562968AG21568.770.86SYNONYMOUS_CODING(SILENT|caA/caG|Q312|None|Vigan.01G036700.01)Vigna nepalensis
2563049GA261033.771.00SYNONYMOUS_CODING(SILENT|ctG/ctA|L339|None|Vigan.01G036700.01)Vigna nepalensis
2563298CT491893.771.00SYNONYMOUS_CODING(SILENT|gaC/gaT|D422|None|Vigan.01G036700.01)Vigna nepalensis
2563494AG502059.771.00NON_SYNONYMOUS_CODING(MISSENSE|Aga/Gga|R488G|None|Vigan.01G036700.01), SPLICE_SITE_REGION(|||None|Vigan.01G036700.01)Vigna nepalensis
2563514CG471979.771.00INTRON(|||None|Vigan.01G036700.01)Vigna nepalensis
2563609AT672628.771.00INTRON(|||None|Vigan.01G036700.01)Vigna nepalensis
2563661GA542256.771.00SYNONYMOUS_CODING(SILENT|caG/caA|Q491|None|Vigan.01G036700.01)Vigna nepalensis
2564073AC532151.771.00INTRON(|||None|Vigan.01G036700.01)Vigna nepalensis
2564314AT441937.771.00INTRON(|||None|Vigan.01G036700.01)Vigna nepalensis
2564327GA441949.771.00INTRON(|||None|Vigan.01G036700.01)Vigna nepalensis
2564328GA441990.771.00INTRON(|||None|Vigan.01G036700.01)Vigna nepalensis
2564335TC431895.771.00INTRON(|||None|Vigan.01G036700.01)Vigna nepalensis
2564391AT502017.771.00INTRON(|||None|Vigan.01G036700.01), SPLICE_SITE_REGION(|||None|Vigan.01G036700.01)Vigna nepalensis
2564435TC491974.771.00SYNONYMOUS_CODING(SILENT|Tta/Cta|L629|None|Vigan.01G036700.01)Vigna nepalensis
2564816CT491963.771.00UTR_3_PRIME(|138||None|Vigan.01G036700.01)Vigna nepalensis
2564851TG491993.771.00UTR_3_PRIME(|173||None|Vigan.01G036700.01)Vigna nepalensis
2564922TG582607.771.00UTR_3_PRIME(|244||None|Vigan.01G036700.01)Vigna nepalensis
2565022GA471727.771.00UTR_3_PRIME(|344||None|Vigan.01G036700.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
2561400GTG401383.731.00UTR_5_PRIME(|103||None|Vigan.01G036700.01)Vigna nepalensis
2562785CTAC952145.730.56FRAME_SHIFT(|tat/|Y252|None|Vigan.01G036700.01)Vigna nepalensis
2564285AACCAATTTAAAATATAAT472339.731.00INTRON(|||None|Vigan.01G036700.01)Vigna nepalensis
2564287GGAGTAAGATAAAATCAATAAGACC422954.731.00INTRON(|||None|Vigan.01G036700.01)Vigna nepalensis
2564308ATGTA441928.731.00INTRON(|||None|Vigan.01G036700.01)Vigna nepalensis
2564345GTTATCGTTGTTAG451982.731.00INTRON(|||None|Vigan.01G036700.01)Vigna nepalensis
2564363TTTC452077.731.00INTRON(|||None|Vigan.01G036700.01)Vigna nepalensis
2564365TAATCAT452078.731.00INTRON(|||None|Vigan.01G036700.01)Vigna nepalensis
2564762AATTAT452055.731.00UTR_3_PRIME(|85||None|Vigan.01G036700.01)Vigna nepalensis
2564934TTAAC602831.731.00UTR_3_PRIME(|257||None|Vigan.01G036700.01)Vigna nepalensis