Variant information

Chr01:15701574 - 15703510

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
15701595AT582357.771.00UTR_5_PRIME(|165||None|Vigan.01G147100.01)Vigna nepalensis
15701657AT461734.771.00UTR_5_PRIME(|103||None|Vigan.01G147100.01)Vigna nepalensis
15701720TG562276.771.00START_GAINED(|||None|Vigan.01G147100.01), UTR_5_PRIME(|40||None|Vigan.01G147100.01)Vigna nepalensis
15701813AG572233.771.00SYNONYMOUS_CODING(SILENT|gaA/gaG|E18|None|Vigan.01G147100.01)Vigna nepalensis
15701835AG562231.771.00NON_SYNONYMOUS_CODING(MISSENSE|Aca/Gca|T26A|None|Vigan.01G147100.01)Vigna nepalensis
15702232AT462041.771.00INTRON(|||None|Vigan.01G147100.01)Vigna nepalensis
15702233GT462041.771.00INTRON(|||None|Vigan.01G147100.01)Vigna nepalensis
15702260AT451970.771.00INTRON(|||None|Vigan.01G147100.01)Vigna nepalensis
15702282AC501965.771.00INTRON(|||None|Vigan.01G147100.01)Vigna nepalensis
15702452TG552452.771.00INTRON(|||None|Vigan.01G147100.01)Vigna nepalensis
15702718AT541945.771.00NON_SYNONYMOUS_CODING(MISSENSE|gAt/gTt|D125V|None|Vigan.01G147100.01)Vigna nepalensis
15703079GT532269.771.00NON_SYNONYMOUS_CODING(MISSENSE|tGg/tTg|W211L|None|Vigan.01G147100.01)Vigna nepalensis
15703123AG471855.771.00INTRON(|||None|Vigan.01G147100.01)Vigna nepalensis
15703174TG492143.771.00INTRON(|||None|Vigan.01G147100.01)Vigna nepalensis
15703372TA521999.771.00UTR_3_PRIME(|66||None|Vigan.01G147100.01)Vigna nepalensis
15703490GA532181.771.00UTR_3_PRIME(|184||None|Vigan.01G147100.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
15702258TTC441961.731.00INTRON(|||None|Vigan.01G147100.01)Vigna nepalensis
15702267GGAC451868.731.00INTRON(|||None|Vigan.01G147100.01)Vigna nepalensis
15702481TTA572262.731.00INTRON(|||None|Vigan.01G147100.01)Vigna nepalensis
15702814GGTTTA602646.731.00INTRON(|||None|Vigan.01G147100.01)Vigna nepalensis
15703093GTACAG492280.731.00INTRON(|||None|Vigan.01G147100.01), SPLICE_SITE_DONOR(|||None|Vigan.01G147100.01), SPLICE_SITE_REGION(|||None|Vigan.01G147100.01)Vigna nepalensis
15703163AGA502133.731.00INTRON(|||None|Vigan.01G147100.01)Vigna nepalensis
15703165AAGTTA502196.731.00INTRON(|||None|Vigan.01G147100.01)Vigna nepalensis