Variant information

Chr01:12147908 - 12149820

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
12148060GA32226.770.19DOWNSTREAM(|2259||None|Vigan.01G123600.01), SYNONYMOUS_CODING(SILENT|ccG/ccA|P27|None|Vigan.01G123500.01)Vigna nepalensis
12148077TC34229.770.24DOWNSTREAM(|2242||None|Vigan.01G123600.01), NON_SYNONYMOUS_CODING(MISSENSE|cTc/cCc|L33P|None|Vigan.01G123500.01)Vigna nepalensis
12148084CT32190.770.22DOWNSTREAM(|2235||None|Vigan.01G123600.01), SYNONYMOUS_CODING(SILENT|ttC/ttT|F35|None|Vigan.01G123500.01)Vigna nepalensis
12148114CT46463.770.30DOWNSTREAM(|2205||None|Vigan.01G123600.01), SYNONYMOUS_CODING(SILENT|ctC/ctT|L45|None|Vigan.01G123500.01)Vigna nepalensis
12148116GT45463.770.31DOWNSTREAM(|2203||None|Vigan.01G123600.01), NON_SYNONYMOUS_CODING(MISSENSE|tGc/tTc|C46F|None|Vigan.01G123500.01)Vigna nepalensis
12148118GA44460.770.32DOWNSTREAM(|2201||None|Vigan.01G123600.01), NON_SYNONYMOUS_CODING(MISSENSE|Gcc/Acc|A47T|None|Vigan.01G123500.01)Vigna nepalensis
12148129AG46451.770.30DOWNSTREAM(|2190||None|Vigan.01G123600.01), SYNONYMOUS_CODING(SILENT|aaA/aaG|K50|None|Vigan.01G123500.01)Vigna nepalensis
12148135CT50451.770.28DOWNSTREAM(|2184||None|Vigan.01G123600.01), SYNONYMOUS_CODING(SILENT|tcC/tcT|S52|None|Vigan.01G123500.01)Vigna nepalensis
12148161AG51436.770.25DOWNSTREAM(|2158||None|Vigan.01G123600.01), NON_SYNONYMOUS_CODING(MISSENSE|gAc/gGc|D61G|None|Vigan.01G123500.01)Vigna nepalensis
12148166GA53465.770.28DOWNSTREAM(|2153||None|Vigan.01G123600.01), NON_SYNONYMOUS_CODING(MISSENSE|Gtc/Atc|V63I|None|Vigan.01G123500.01)Vigna nepalensis
12148207CT40147.770.17DOWNSTREAM(|2112||None|Vigan.01G123600.01), SYNONYMOUS_CODING(SILENT|ccC/ccT|P76|None|Vigan.01G123500.01)Vigna nepalensis
12148210GA36130.770.17DOWNSTREAM(|2109||None|Vigan.01G123600.01), SYNONYMOUS_CODING(SILENT|ccG/ccA|P77|None|Vigan.01G123500.01)Vigna nepalensis
12148345GA39126.770.18DOWNSTREAM(|1974||None|Vigan.01G123600.01), SYNONYMOUS_CODING(SILENT|acG/acA|T122|None|Vigan.01G123500.01)Vigna nepalensis
12148376GA51403.770.25DOWNSTREAM(|1943||None|Vigan.01G123600.01), NON_SYNONYMOUS_CODING(MISSENSE|Ggg/Agg|G133R|None|Vigan.01G123500.01)Vigna nepalensis
12148383GA51438.770.27DOWNSTREAM(|1936||None|Vigan.01G123600.01), NON_SYNONYMOUS_CODING(MISSENSE|gGc/gAc|G135D|None|Vigan.01G123500.01)Vigna nepalensis
12148426GA61632.770.38DOWNSTREAM(|1893||None|Vigan.01G123600.01), SYNONYMOUS_CODING(SILENT|gtG/gtA|V149|None|Vigan.01G123500.01)Vigna nepalensis
12148468AG681540.770.65DOWNSTREAM(|1851||None|Vigan.01G123600.01), SYNONYMOUS_CODING(SILENT|aaA/aaG|K163|None|Vigan.01G123500.01)Vigna nepalensis
12148485CT661275.770.52DOWNSTREAM(|1834||None|Vigan.01G123600.01), NON_SYNONYMOUS_CODING(MISSENSE|gCt/gTt|A169V|None|Vigan.01G123500.01)Vigna nepalensis
12148490GA67238.770.16DOWNSTREAM(|1829||None|Vigan.01G123600.01), NON_SYNONYMOUS_CODING(MISSENSE|Gtc/Atc|V171I|None|Vigan.01G123500.01)Vigna nepalensis
12148500GA681256.770.50DOWNSTREAM(|1819||None|Vigan.01G123600.01), NON_SYNONYMOUS_CODING(MISSENSE|gGc/gAc|G174D|None|Vigan.01G123500.01)Vigna nepalensis
12148511GA57431.770.26DOWNSTREAM(|1808||None|Vigan.01G123600.01), NON_SYNONYMOUS_CODING(MISSENSE|Ggc/Agc|G178S|None|Vigan.01G123500.01)Vigna nepalensis
12148521GA54393.770.24DOWNSTREAM(|1798||None|Vigan.01G123600.01), NON_SYNONYMOUS_CODING(MISSENSE|gGc/gAc|G181D|None|Vigan.01G123500.01)Vigna nepalensis
12148532GA51631.770.41DOWNSTREAM(|1787||None|Vigan.01G123600.01), NON_SYNONYMOUS_CODING(MISSENSE|Ggc/Agc|G185S|None|Vigan.01G123500.01)Vigna nepalensis
12148562CG45225.770.20DOWNSTREAM(|1757||None|Vigan.01G123600.01), NON_SYNONYMOUS_CODING(MISSENSE|Cag/Gag|Q195E|None|Vigan.01G123500.01)Vigna nepalensis
12148570CT39291.770.23DOWNSTREAM(|1749||None|Vigan.01G123600.01), SYNONYMOUS_CODING(SILENT|tcC/tcT|S197|None|Vigan.01G123500.01)Vigna nepalensis
12148863AT451786.771.00DOWNSTREAM(|1456||None|Vigan.01G123600.01), INTRON(|||None|Vigan.01G123500.01)Vigna nepalensis
12149019GA492078.771.00DOWNSTREAM(|1300||None|Vigan.01G123600.01), INTRON(|||None|Vigan.01G123500.01)Vigna nepalensis
12149558TG451891.771.00DOWNSTREAM(|761||None|Vigan.01G123600.01), UTR_3_PRIME(|51||None|Vigan.01G123500.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
12148489CGC67702.730.33DOWNSTREAM(|1829||None|Vigan.01G123600.01), FRAME_SHIFT(|gtc/|V171|None|Vigan.01G123500.01)Vigna nepalensis
12148773GGA431136.730.98DOWNSTREAM(|1545||None|Vigan.01G123600.01), INTRON(|||None|Vigan.01G123500.01)Vigna nepalensis
12149045TTA431691.731.00DOWNSTREAM(|1273||None|Vigan.01G123600.01), INTRON(|||None|Vigan.01G123500.01)Vigna nepalensis