GBrowse Details

Vigan.UMG006500.01

Basic Information:
Name: Vigan.UMG006500.01
Multiple alignment
Variant Information
Position: Scaffold_0020:209039..211964 (+ strand)
Length: 2926
Functional Information:
Description: Similar to Uncharacterized protein. [I1JXR6, Glycine max]
InterPro: CRAL-TRIO domain (IPR001251)
CRAL/TRIO, N-terminal domain (IPR011074)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:76.13,112.26,29.45,64.11,9.13,18.96,8.24,30.95
Arabidopsis thaliana homolog: AT1G01630.1
Automatic updates:
Name: NM_001254544 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max random slug protein 5-like (LOC100797666), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Scaffold_0020:209039..209259 (+ strand)
Length: 221
Type: five_prime_UTR
Position: Scaffold_0020:209260..209421 (+ strand)
Length: 162
Type: CDS
Position: Scaffold_0020:209894..210152 (+ strand)
Length: 259
Type: CDS
Position: Scaffold_0020:210232..210268 (+ strand)
Length: 37
Type: CDS
Position: Scaffold_0020:210964..211069 (+ strand)
Length: 106
Type: CDS
Position: Scaffold_0020:211193..211303 (+ strand)
Length: 111
Type: CDS
Position: Scaffold_0020:211387..211503 (+ strand)
Length: 117
Type: CDS
Position: Scaffold_0020:211504..211964 (+ strand)
Length: 461
Type: three_prime_UTR

>Vigan.UMG006500.01 class=Sequence position=Scaffold_0020:209039..211964 (+ strand)
GAAAACTTTC CTCAATAAAG TGGCATTTGA ATGAAAACCC GGGTAGTTGA ACATTCAACA ACTGCTGTCA ATACTAACCA
CTCAAATCCC CAGAAGAAGT TTCGCATTTA AGAAGGAGAA AAAATGAGAC AGCTTTTCTT GCCTCCGTGT TCTTGTGAGT
GAGAACACCA GACACAAATT CGTGTCGGTG AGGAAAAGTG TTGAGGCAGA TATTCAAGGG AATGGAGAGT GTCGTGAGCC
CTGAACCATC ACAGAAGTCA CCCTTGGATT CCAGTTCCAA ACAAGTCACA ACCATTGAAG AACTGAAAGA CAGCACTGAT
GCCGAACTCA CCAAAATTGG TCTCATGAGG GCCTTTGTTG AAGCCCGAGA TCCCTTTTCC AAGGTACCCA CATGCCCAAA
ACCATTCAAC ACAATTCAAG TTGCCACCTT TTCCTGCAAC CAAATTAATT GTCATGGATT TGTGCCCTTT CTTTCTTTGT
GAAAGTAGTG CTGCACTTTC CTTACATGTT ATTGTGAATC ATATGGATAA AATGAAACTA TCTTTCTTCT TACTGTACTA
GTTTTTGCAT AGCTAATTTC TGTCCAAGAA TCTAGCATTC AATGTTTTGA TCATGATGTT TAAATTTTCA TAGCTTGATA
TTAGAGATTC GAATCGGGGT TGCAGTTAGA TTAACAACTG TGTTGGTATA TATACGGATA AAACTATTTG TGACCCTGAT
ATTTCCAATT ACAACGGAAT GCCCAGAAAC AGAAATTGAC TTTTATTCGG AACTAGAAGT GTTGAACTAA TAAAAATGCA
AAATTTATGA TGCCTAAGTG GAATTTAATT TGGTTGAGCT TTGGTGAATG GGCAGGAAGT GGATGATTTG ACGATTAGAA
GATTCTTGCG GGCTCGTAAT TTAGATGTGG AAAAGGCTTC GGCAATGTTC CTGAAGTATT TGAAGTGGAA ACGTTCGATT
ATGCCAAATG GTTATATATC ACCGTCAGAG ATTGCCGAAG ATATTGCACA AGAGAAGGTG TTTGTGCAAG GGCTCGACAA
GAAGGGTCGA CCTATAGTTG TTGCCTTTGC TGCAAAACAT TTTCAAAGCA AAAATGGTGC CGATGGATTT AAACGTATTA
TTCTCACTTC TGATCCAATG CAATTTGCAT TTCAAGTCCT CTTAATGACA ACAAGTACTT CTTCTGTATG CAGGTTATGT
AGCCTTTACT CTCGAGAAGC TATGTTCAAG GTGCATCGCT TTTCCTCTGC TAATTCATAC ATGTGCATAA TAAAATGAGT
TCAATACGAC TTTAGTCCAT GCAATTCATC TTTCTGGTCA ACTTTAGTCA TTGGCACCAC TGAAAAATAA ATGAATTATT
AACTTTGGTT ATCACAGTTG AATTTGATCT GCAACATCTT ATCCAATTAC CACTGATGTC ACTTTTACGG ACTGATAGTC
TAACTGTTTC TGCATTTCAA AGGCTAAAAC TCTCGTTCTC AAAGTAGAAA TAAAGATTAA AATATAGAAA ACAACTATTC
CAATTTGGTC TCCAAAGTAT AAGTTTTATG TTAGTCTCTC AAAGTATCTC TGTTAGACAA AAATGATTAT TCGGATAGTT
TTATACAGTG ATGGAGTTAA ATTTGGTTGG TGTGACATCT TTCACTCTTG TCCTAAATCT CGGAAAGACT AATTTGGTGT
AACAGAGACA TGAGAATACA GTGAAACATT TTAACTTAAA GGACGAAGCT AGAATCAAAA GTTCATAAAA ATAAAATTAA
ACCACTTCCA CCCAAATGAA TCTGAGATAT ATATGCAGCT GCATTTTGAA CTCTAGACAT GAAATTTATG TTTTTGTCCA
AAAATTTTAA TTATAACCTA CACATAGAAC TGTGAATATG GTAGAAGATT GTAAAGATTG TTAATATGCC TATTTAACAT
GTCAGGATGC CACCGGGGCA AGAAAAGTTT CTTAGCATTG CAGACATTGA AGGATGGGGA TATGCAAACA GTGACCTTCG
TGGATACCTT AATGCTCTAT CCACTTTGCA GGTTTAGGTT TCCCTCCATT CATTAACCAC TTCTCTCCAC AAATATTGTG
CATAACTTTT CCTTGTGTGT TTAACTGGAA AGTTGAAACA TCCAGACCTC ACATGTCCCT TTTTCTGACT GCAGGATTGC
TACCCTGAAA GATTAGGAAA GATGTTTATT GTACACGCAC CATATTTGTT TATGAAAATT TGGAAAATGA TTTACCCTTT
CATTGATGAC AACACTAAGA AAAAGGTGAC ACTTGAAATT CATAATACAT GTTATATTTT GCATGAGATG TTGTAGCAGC
ATACTTTGAA TGTTGTAGTT CTGTGCAGAT AGTATTCGTG GAGAACAAAA AGCTGAAATC AACATTGCTA GAAGAGATAG
AAGAGAGTCA ACTCCCAGAT ATATACGGAG GCCAAATGGC GTTAGTTCCT ATTCAGGATA GCTGATTAGA TTATACTTTT
TAAGGATGGT TTGTCAACTT AATCTCTCCA AATAATTTCA TCTATGTAGC ACAAGTAAAA TACATATTAT AGTCCTCTAG
TTCATCACAT AGCGTACGCA TATAATCTGT AATATGTAAT GTGCATGCTT AGTGAGGCTT ATAACAGGCT ATTTTACAAG
AACTTGTTCT TTGAATGCTA TAATCTCTGC ATCAATTTAT CGCAAGGTAT CTCTGCAAGA ATAAATCACA GTTATTAGTG
ACAAAATTCA TACATATGTA TGGTTTGTTT TTTTGGTCCA ATCATATTGA GTTGGAACCT AGTTGGCTAC ATTCATGCTT
ATGATACACC GTGTAGTCTA CAGCGAAGAA TTTTTACTCT ATTAGTGATT CCAAGCTCTA TCCCATAATT TTGAGCCACT
CTTGAATATG GCTGTAAATT TTCTCCCATT TGTTGAGCAA CCAAGA

>Vigan.UMG006500.01
GAAAACTTTC CTCAATAAAG TGGCATTTGA ATGAAAACCC GGGTAGTTGA ACATTCAACA ACTGCTGTCA ATACTAACCA
CTCAAATCCC CAGAAGAAGT TTCGCATTTA AGAAGGAGAA AAAATGAGAC AGCTTTTCTT GCCTCCGTGT TCTTGTGAGT
GAGAACACCA GACACAAATT CGTGTCGGTG AGGAAAAGTG TTGAGGCAGA TATTCAAGGG AATGGAGAGT GTCGTGAGCC
CTGAACCATC ACAGAAGTCA CCCTTGGATT CCAGTTCCAA ACAAGTCACA ACCATTGAAG AACTGAAAGA CAGCACTGAT
GCCGAACTCA CCAAAATTGG TCTCATGAGG GCCTTTGTTG AAGCCCGAGA TCCCTTTTCC AAGGAAGTGG ATGATTTGAC
GATTAGAAGA TTCTTGCGGG CTCGTAATTT AGATGTGGAA AAGGCTTCGG CAATGTTCCT GAAGTATTTG AAGTGGAAAC
GTTCGATTAT GCCAAATGGT TATATATCAC CGTCAGAGAT TGCCGAAGAT ATTGCACAAG AGAAGGTGTT TGTGCAAGGG
CTCGACAAGA AGGGTCGACC TATAGTTGTT GCCTTTGCTG CAAAACATTT TCAAAGCAAA AATGGTGCCG ATGGATTTAA
ACGTTATGTA GCCTTTACTC TCGAGAAGCT ATGTTCAAGG ATGCCACCGG GGCAAGAAAA GTTTCTTAGC ATTGCAGACA
TTGAAGGATG GGGATATGCA AACAGTGACC TTCGTGGATA CCTTAATGCT CTATCCACTT TGCAGGATTG CTACCCTGAA
AGATTAGGAA AGATGTTTAT TGTACACGCA CCATATTTGT TTATGAAAAT TTGGAAAATG ATTTACCCTT TCATTGATGA
CAACACTAAG AAAAAGATAG TATTCGTGGA GAACAAAAAG CTGAAATCAA CATTGCTAGA AGAGATAGAA GAGAGTCAAC
TCCCAGATAT ATACGGAGGC CAAATGGCGT TAGTTCCTAT TCAGGATAGC TGATTAGATT ATACTTTTTA AGGATGGTTT
GTCAACTTAA TCTCTCCAAA TAATTTCATC TATGTAGCAC AAGTAAAATA CATATTATAG TCCTCTAGTT CATCACATAG
CGTACGCATA TAATCTGTAA TATGTAATGT GCATGCTTAG TGAGGCTTAT AACAGGCTAT TTTACAAGAA CTTGTTCTTT
GAATGCTATA ATCTCTGCAT CAATTTATCG CAAGGTATCT CTGCAAGAAT AAATCACAGT TATTAGTGAC AAAATTCATA
CATATGTATG GTTTGTTTTT TTGGTCCAAT CATATTGAGT TGGAACCTAG TTGGCTACAT TCATGCTTAT GATACACCGT
GTAGTCTACA GCGAAGAATT TTTACTCTAT TAGTGATTCC AAGCTCTATC CCATAATTTT GAGCCACTCT TGAATATGGC
TGTAAATTTT CTCCCATTTG TTGAGCAACC AAGA

>Vigan.UMG006500.01
ATGGAGAGTG TCGTGAGCCC TGAACCATCA CAGAAGTCAC CCTTGGATTC CAGTTCCAAA CAAGTCACAA CCATTGAAGA
ACTGAAAGAC AGCACTGATG CCGAACTCAC CAAAATTGGT CTCATGAGGG CCTTTGTTGA AGCCCGAGAT CCCTTTTCCA
AGGAAGTGGA TGATTTGACG ATTAGAAGAT TCTTGCGGGC TCGTAATTTA GATGTGGAAA AGGCTTCGGC AATGTTCCTG
AAGTATTTGA AGTGGAAACG TTCGATTATG CCAAATGGTT ATATATCACC GTCAGAGATT GCCGAAGATA TTGCACAAGA
GAAGGTGTTT GTGCAAGGGC TCGACAAGAA GGGTCGACCT ATAGTTGTTG CCTTTGCTGC AAAACATTTT CAAAGCAAAA
ATGGTGCCGA TGGATTTAAA CGTTATGTAG CCTTTACTCT CGAGAAGCTA TGTTCAAGGA TGCCACCGGG GCAAGAAAAG
TTTCTTAGCA TTGCAGACAT TGAAGGATGG GGATATGCAA ACAGTGACCT TCGTGGATAC CTTAATGCTC TATCCACTTT
GCAGGATTGC TACCCTGAAA GATTAGGAAA GATGTTTATT GTACACGCAC CATATTTGTT TATGAAAATT TGGAAAATGA
TTTACCCTTT CATTGATGAC AACACTAAGA AAAAGATAGT ATTCGTGGAG AACAAAAAGC TGAAATCAAC ATTGCTAGAA
GAGATAGAAG AGAGTCAACT CCCAGATATA TACGGAGGCC AAATGGCGTT AGTTCCTATT CAGGATAGCT GA

>Vigan.UMG006500.01
MESVVSPEPS QKSPLDSSSK QVTTIEELKD STDAELTKIG LMRAFVEARD PFSKEVDDLT IRRFLRARNL DVEKASAMFL
KYLKWKRSIM PNGYISPSEI AEDIAQEKVF VQGLDKKGRP IVVAFAAKHF QSKNGADGFK RYVAFTLEKL CSRMPPGQEK
FLSIADIEGW GYANSDLRGY LNALSTLQDC YPERLGKMFI VHAPYLFMKI WKMIYPFIDD NTKKKIVFVE NKKLKSTLLE
EIEESQLPDI YGGQMALVPI QDS*