GBrowse Details

Vigan.11G223300.01

Basic Information:
Name: Vigan.11G223300.01
Multiple alignment
Variant Information
Position: Chr11:34974237..34976666 (+ strand)
Length: 2430
Functional Information:
Description: Similar to Uncharacterized protein. [C6T3D6, Glycine max]
GO: Molecular Function: hydrolase activity (GO:0016787)
InterPro: NUDIX hydrolase domain (IPR000086)
NUDIX hydrolase domain-like (IPR015797)
NUDIX hydrolase, conserved site (IPR020084)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:43.92,8.28,9.48,55.26,52.86,4.05,19.30,28.00
Arabidopsis thaliana homolog: AT1G18300.1
Automatic updates:
Name: BT091947 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-9O5 unknown mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:34974237..34974736 (+ strand)
Length: 500
Type: five_prime_UTR
Position: Chr11:34974737..34974912 (+ strand)
Length: 176
Type: CDS
Position: Chr11:34975461..34975560 (+ strand)
Length: 100
Type: CDS
Position: Chr11:34975666..34975749 (+ strand)
Length: 84
Type: CDS
Position: Chr11:34975858..34975986 (+ strand)
Length: 129
Type: CDS
Position: Chr11:34976104..34976220 (+ strand)
Length: 117
Type: CDS
Position: Chr11:34976221..34976666 (+ strand)
Length: 446
Type: three_prime_UTR

>Vigan.11G223300.01 class=Sequence position=Chr11:34974237..34976666 (+ strand)
ATGTAAACTA AAGAATAATT ATAAATATCT ATGCCTAATG GTAAATAATT AATTATTACA GTAATTTACT TTTGTAATGA
ACAAACCATA AAACTACTTA TCACATGTAC AGATTAAGAG AAAAGAGAGC GTTTCTAAAC GTGGGAGAAG AAACTGGTTG
GTGGAAATTT GAAACCCTCA AACGTTTTTA GAATTTTCTA CCTAAAAAAG AAAGAAAGAA ATTACCCCAA AAAAACGTTT
CAATTGAAGA AAGCGCGTGA GTAAACGTAC CGGTCATGCG CTGTGTCTTT TGAACGCTGT ACTTATCTAT ACGCGCACAC
TTTTACACAC ATCTTCCACC CAAGAATCAA ACAGATAGTT ATATATAAAG AACCTCTTTG GCTGTCCCAT ACCATAATTC
ATGTCTGTTG CTTCTTTCTT CTCATCTTCT TCTCCCCTTT AATTTTATTA TCGCTACTCC ACTTTGCAAA CACTACTCCA
ACAACAACAA GATTAGCGTT ATGGGTCTCT TCCTTTCTCG GAATCTGGCT TGCAAATTCA TATACCCTTT TCTTTTCTCC
AAGAGAGTTT CCAAGGATTT GTTTCCCAAG CAGTTGGAGA ACATGATGTC TCTGGTGTCC CCTCGTACTG GCAGGCATTT
GCAGCGTTAT GACCAAGGAT GTCGCCAAGT TGTGGGGTGT GTTCTTGTTC CTTCCCATGC CTTTTTCTTC CTGTTTCTTC
TTCTGGGGTT TCATCAAGTT CTGATTTTTA GGGGTTTCTT AGTTTCTTTC TTTCTCTCAC TAAATGTTTC TCCCATAGTA
ATTTTACACT TTCCAGGGAC TGGTTTTAAT TTAAACTTGT TGAATTTGTA AAGTTATATT TGAAACGAGT GTTTCAAGAA
CTGAAATGAA AGAAATGGAA AGATAAGCAC ATATCAGAAA ACAAAAACTA ATTTTGAAAA AAAATAACCA AACTTACCAG
CATCCCAGAG TCGAAGATGG TGGACACGCT TTGAAATTTT CAATTTTTTT CTCAATTGGG GGCTTTTTGT TTTTTGTTTT
GGAAGAGGGT TTAAAGCGTG TCTTTGATTT AATCATTGAT GGCCGGTGGC AGAAAAAAAA TACATTTTTT GTAAATAATA
ATTTTTTTTG GTTTGGTGGG TTTGAAGTTA AATTTGTCCT TTTCTGTGTG TATATTGAGT TGTTAAGCTG ACTTGTTCTG
TGGGGTGTTT TTGGAAATGA ACAGGTGCAT TCCTTATAGA TACAAGAACA ATGGAACAAA AGATAAGGAG TTAGAGGTTC
TTGTGATTAG TGCTCAGAAA GGCCATGGAA TGCAGTTCCC AAAGGTATTG ATTTTTCCTC CACATCTTGT ATTGTTTTGA
AGCTTAACTT TGGTTCATTT CAACCCTTTT TGATCTTGTT ACTGATGTTA GAGTGTTATT TGGTCTCAGG GAGGTTGGGA
AATTGATGAA TCCATGGAAC AAGCTGCTCT AAGAGAGACT ATAGAAGAAG CTGGGGTTAT TGGCAGTGTT GAGGTAAGTG
TGTGTGAGCA AGTACTTTTT AGATTGAGTT TTTCTTCAGC CCTTAAATAA TAGTGTCTTT GAATCTTACC TTATGTGTGG
TGTTTGTTTG TTCTCTTGCA GAATAATTTG GGTAAATGGT ATTACAAGAG CAAACGGCAA CCCATAATGC ATGAGGGATA
CATGTTCCCT TTGCTTGTTA AGAAGGAATT GGATAATTGG CCAGAGATGA ACACAAGAAA ACGCAGATGG GTAAGTGTTT
AACCTATTTT TCAGTTGTCA AATTCACTTT CTCAAGAGCA ATATATCTTA GTCATTTAAC TTTGATTTTG TTAGTGTTCT
AATGTTTAAC TGATATGCAT CATGCAGATG ACTGTGGCTG AGGCAAAAGA AATATGTCCT TATCCTTGGA TGAAAGAGGC
TTTGGATGTG TTGGTAATGA GGCAAAATCA GCTGCAAAAG GATGTGGATA TGAGTAGGCT GTAAATTATG TATGGGGTGT
TTGGTTTAAC GTTTCAGATG TGATTTTTCA CGCCTAGAGA GGAAGTAGTA GGTTATAACT TTTGCATCTC CAAGGTGGTT
TCTTACTTCT CAACGATTTT CCAAACACGG ATGTGGCAGA TAATCGCTTT TGGAATCCAC TAAGTGGTAA AACAGAAGCA
CTCAGAAGCT GTTAGTGGAA GAGAAACTGA GACATCATAG CCATGAAGAG AGAAACCTGA TTTTCAAGGT TGCAATTTCT
CCCTTGAGTT TGTTTCTGTC TTCAAATTGG CTATAGTTTG AAAGTTTAGC TGAGTTTGCA GTGGGTTTAG TTGAGATCTA
GCCATAGAAA TCAGCTGTAG ATGTACAAAA TCAATTCATT CTTTGATTCA TTTCATTCTT TCTAATGTAA TGTATGTGTA
GGTCTTGTGT AGAACACATT CTTCCTGTAT 

>Vigan.11G223300.01
ATGTAAACTA AAGAATAATT ATAAATATCT ATGCCTAATG GTAAATAATT AATTATTACA GTAATTTACT TTTGTAATGA
ACAAACCATA AAACTACTTA TCACATGTAC AGATTAAGAG AAAAGAGAGC GTTTCTAAAC GTGGGAGAAG AAACTGGTTG
GTGGAAATTT GAAACCCTCA AACGTTTTTA GAATTTTCTA CCTAAAAAAG AAAGAAAGAA ATTACCCCAA AAAAACGTTT
CAATTGAAGA AAGCGCGTGA GTAAACGTAC CGGTCATGCG CTGTGTCTTT TGAACGCTGT ACTTATCTAT ACGCGCACAC
TTTTACACAC ATCTTCCACC CAAGAATCAA ACAGATAGTT ATATATAAAG AACCTCTTTG GCTGTCCCAT ACCATAATTC
ATGTCTGTTG CTTCTTTCTT CTCATCTTCT TCTCCCCTTT AATTTTATTA TCGCTACTCC ACTTTGCAAA CACTACTCCA
ACAACAACAA GATTAGCGTT ATGGGTCTCT TCCTTTCTCG GAATCTGGCT TGCAAATTCA TATACCCTTT TCTTTTCTCC
AAGAGAGTTT CCAAGGATTT GTTTCCCAAG CAGTTGGAGA ACATGATGTC TCTGGTGTCC CCTCGTACTG GCAGGCATTT
GCAGCGTTAT GACCAAGGAT GTCGCCAAGT TGTGGGGTGC ATTCCTTATA GATACAAGAA CAATGGAACA AAAGATAAGG
AGTTAGAGGT TCTTGTGATT AGTGCTCAGA AAGGCCATGG AATGCAGTTC CCAAAGGGAG GTTGGGAAAT TGATGAATCC
ATGGAACAAG CTGCTCTAAG AGAGACTATA GAAGAAGCTG GGGTTATTGG CAGTGTTGAG AATAATTTGG GTAAATGGTA
TTACAAGAGC AAACGGCAAC CCATAATGCA TGAGGGATAC ATGTTCCCTT TGCTTGTTAA GAAGGAATTG GATAATTGGC
CAGAGATGAA CACAAGAAAA CGCAGATGGA TGACTGTGGC TGAGGCAAAA GAAATATGTC CTTATCCTTG GATGAAAGAG
GCTTTGGATG TGTTGGTAAT GAGGCAAAAT CAGCTGCAAA AGGATGTGGA TATGAGTAGG CTGTAAATTA TGTATGGGGT
GTTTGGTTTA ACGTTTCAGA TGTGATTTTT CACGCCTAGA GAGGAAGTAG TAGGTTATAA CTTTTGCATC TCCAAGGTGG
TTTCTTACTT CTCAACGATT TTCCAAACAC GGATGTGGCA GATAATCGCT TTTGGAATCC ACTAAGTGGT AAAACAGAAG
CACTCAGAAG CTGTTAGTGG AAGAGAAACT GAGACATCAT AGCCATGAAG AGAGAAACCT GATTTTCAAG GTTGCAATTT
CTCCCTTGAG TTTGTTTCTG TCTTCAAATT GGCTATAGTT TGAAAGTTTA GCTGAGTTTG CAGTGGGTTT AGTTGAGATC
TAGCCATAGA AATCAGCTGT AGATGTACAA AATCAATTCA TTCTTTGATT CATTTCATTC TTTCTAATGT AATGTATGTG
TAGGTCTTGT GTAGAACACA TTCTTCCTGT AT

>Vigan.11G223300.01
ATGGGTCTCT TCCTTTCTCG GAATCTGGCT TGCAAATTCA TATACCCTTT TCTTTTCTCC AAGAGAGTTT CCAAGGATTT
GTTTCCCAAG CAGTTGGAGA ACATGATGTC TCTGGTGTCC CCTCGTACTG GCAGGCATTT GCAGCGTTAT GACCAAGGAT
GTCGCCAAGT TGTGGGGTGC ATTCCTTATA GATACAAGAA CAATGGAACA AAAGATAAGG AGTTAGAGGT TCTTGTGATT
AGTGCTCAGA AAGGCCATGG AATGCAGTTC CCAAAGGGAG GTTGGGAAAT TGATGAATCC ATGGAACAAG CTGCTCTAAG
AGAGACTATA GAAGAAGCTG GGGTTATTGG CAGTGTTGAG AATAATTTGG GTAAATGGTA TTACAAGAGC AAACGGCAAC
CCATAATGCA TGAGGGATAC ATGTTCCCTT TGCTTGTTAA GAAGGAATTG GATAATTGGC CAGAGATGAA CACAAGAAAA
CGCAGATGGA TGACTGTGGC TGAGGCAAAA GAAATATGTC CTTATCCTTG GATGAAAGAG GCTTTGGATG TGTTGGTAAT
GAGGCAAAAT CAGCTGCAAA AGGATGTGGA TATGAGTAGG CTGTAA

>Vigan.11G223300.01
MGLFLSRNLA CKFIYPFLFS KRVSKDLFPK QLENMMSLVS PRTGRHLQRY DQGCRQVVGC IPYRYKNNGT KDKELEVLVI
SAQKGHGMQF PKGGWEIDES MEQAALRETI EEAGVIGSVE NNLGKWYYKS KRQPIMHEGY MFPLLVKKEL DNWPEMNTRK
RRWMTVAEAK EICPYPWMKE ALDVLVMRQN QLQKDVDMSR L*