GBrowse Details

Vigan.11G190300.01

Basic Information:
Name: Vigan.11G190300.01
Multiple alignment
Variant Information
Position: Chr11:31238737..31240391 (+ strand)
Length: 1655
Functional Information:
Description: Similar to Terminal flower 1b. [E1CKY1, Vigna unguiculata]
InterPro: Phosphatidylethanolamine-binding, conserved site (IPR001858)
Phosphatidylethanolamine-binding protein PEBP (IPR008914)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,8.76,21.45,0.05,59.44,1.08,1.90
Arabidopsis thaliana homolog: AT5G62040.1
Automatic updates:
Name: NM_001249668 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max phosphatidylethanolamine-binding protein GmBFT (GMBFT), mRNA.
PubMed ID: 18573215 NCBI(pubmed)
Status: Known Variant
Name: NM_001289385 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max terminal flowering 1-like protein 4 (TFL1.4), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:31238737..31239085 (+ strand)
Length: 349
Type: five_prime_UTR
Position: Chr11:31239086..31239283 (+ strand)
Length: 198
Type: CDS
Position: Chr11:31239389..31239450 (+ strand)
Length: 62
Type: CDS
Position: Chr11:31239539..31239579 (+ strand)
Length: 41
Type: CDS
Position: Chr11:31239805..31240022 (+ strand)
Length: 218
Type: CDS
Position: Chr11:31240023..31240391 (+ strand)
Length: 369
Type: three_prime_UTR

>Vigan.11G190300.01 class=Sequence position=Chr11:31238737..31240391 (+ strand)
ATACGTTATG GACACATAGT AGATTCTACC GTTTATCAGA CAAAAAAACT GATATACACA ATACAACATC ATACTTTTGG
GAGCGATCAC TTAGCATTTT CATCATCTAG AGCATGTTCC TTTGACAATT TTGAAGAACC AAATTTCTTA CTTAAACAGT
GTGCTCTTTC CCAAAATAGA CAAGCTTGTA TGGAATCTCT CTTTATGCTT CTAATCCAAG CCAATTTCAT GGTTTATTAT
TTCCCTTCAT AAGCCCTTTT GGCACCTATA AAATGCCTTC AAAATCTCAC TTCTCATATG CCCTTCTTCT CAAAGTTTCC
CTTCTCTGTG CAGTTTCATT CCAATTTTCA TGTCTAGGCT CATGGAACCA CTTTCTGTGG GAAGAGTGAT AGGAGAAGTG
GTTGACATTT TCAGCCCAAG TGTGAGAATG AATGTGACAT ATTCCACCAA GGAAGTTGCT AATGGTCATG AGTTAATGCC
TTCTACTGTT ATGGCCAAAC CACGCGTGGA GATTGGTGGT GATGACATGA GAACTGCTTA TACCTTGGTA AAATAATCAC
TCATTCACCC TATAGCTATG TGTTTCATCA TATATATGTC TCTATCAGTA CCAGTTAACT CATGGTATTT ATGTATAAAA
TGGAACATTT AGATCATGAC AGACCCAGAT GCTCCAAGTC CTAGTGATCC ATGTCTAAGG GAACATCTTC ACTGGTTTGT
GTATAATCAA ACTCTCTATG GTATTTTTTT CTATGTTCTT TGCACTTTCA ATTCCATTAT TAACTTAGTG AGAATTTGCC
AGGATGGTTA CAGATATCCC TGGCACCACA GATGTCTCTT TTGGTTAGTC ACTCTCTTAC CCCACACTAT GTTGATTCTT
ATTGTTATCA GTATTTCTTA ATCTAAGGAT AATGTTTATT ATATACTAGA TATACCTTTA CCACCATATG CAATATTATT
TGTCAAGTTG AATTGCAGAA ATAAAAAGGA ATATCATTTT TAAAGATGCT TGTAAAAAGG GCAGTTTTGT TAACAAAGGG
AACTGTTAAA GTAACAGTAT TCTTACAGGA AAAGAGATTA TGGGGTATGA GAGTCCAAAA CCAGTAATAG GAATCCACAG
ATATGTGTTC ATCTTGTTCA AGCAGAGAGG AAGACAAACA GTTAGAGCTC CTTCTTCAAG AGACCATTTC AACACAAGGA
AATTCTCAGA AGAGAATGGC CTTGGTCTAC CAGTTGCTGC AGTTTACTTC AATGCTCAGA GAGAGACTGC TGCAAGGAGA
AGGTGATTCC AGAAGAAGAA GAAGAAGAAG AAAAGAAAAG GGTTTCAGTA AATAAATTTA TAACTAGTTT CAATCTCAAG
TGTATGAGAT TTGTTTCATC TGGTTTTCTT AGGGTTTGGC ATGGTTGAAC AACAAGGTTA AGTGTGTTTT CATGAAATCT
CTTCTTCTCT TCTGGTTTTC TTTTTCAATT TTCTTGAGAG GTTGGTGGTG TTTAAAAGGT AGTAGATATT CTTGATGTAC
TTTGTACTTA TAGCTATTAT AGGTTATGAG AAGTTGGGGA CCAAACTAGT CTTATGTTTC TTTCAAGGAT CTATGATCTG
TTATTGTAAA GAACATAGCT TTACCAGAGC TGTTACTAAC ATTTTTCATG CTCTA

>Vigan.11G190300.01
ATACGTTATG GACACATAGT AGATTCTACC GTTTATCAGA CAAAAAAACT GATATACACA ATACAACATC ATACTTTTGG
GAGCGATCAC TTAGCATTTT CATCATCTAG AGCATGTTCC TTTGACAATT TTGAAGAACC AAATTTCTTA CTTAAACAGT
GTGCTCTTTC CCAAAATAGA CAAGCTTGTA TGGAATCTCT CTTTATGCTT CTAATCCAAG CCAATTTCAT GGTTTATTAT
TTCCCTTCAT AAGCCCTTTT GGCACCTATA AAATGCCTTC AAAATCTCAC TTCTCATATG CCCTTCTTCT CAAAGTTTCC
CTTCTCTGTG CAGTTTCATT CCAATTTTCA TGTCTAGGCT CATGGAACCA CTTTCTGTGG GAAGAGTGAT AGGAGAAGTG
GTTGACATTT TCAGCCCAAG TGTGAGAATG AATGTGACAT ATTCCACCAA GGAAGTTGCT AATGGTCATG AGTTAATGCC
TTCTACTGTT ATGGCCAAAC CACGCGTGGA GATTGGTGGT GATGACATGA GAACTGCTTA TACCTTGATC ATGACAGACC
CAGATGCTCC AAGTCCTAGT GATCCATGTC TAAGGGAACA TCTTCACTGG ATGGTTACAG ATATCCCTGG CACCACAGAT
GTCTCTTTTG GAAAAGAGAT TATGGGGTAT GAGAGTCCAA AACCAGTAAT AGGAATCCAC AGATATGTGT TCATCTTGTT
CAAGCAGAGA GGAAGACAAA CAGTTAGAGC TCCTTCTTCA AGAGACCATT TCAACACAAG GAAATTCTCA GAAGAGAATG
GCCTTGGTCT ACCAGTTGCT GCAGTTTACT TCAATGCTCA GAGAGAGACT GCTGCAAGGA GAAGGTGATT CCAGAAGAAG
AAGAAGAAGA AGAAAAGAAA AGGGTTTCAG TAAATAAATT TATAACTAGT TTCAATCTCA AGTGTATGAG ATTTGTTTCA
TCTGGTTTTC TTAGGGTTTG GCATGGTTGA ACAACAAGGT TAAGTGTGTT TTCATGAAAT CTCTTCTTCT CTTCTGGTTT
TCTTTTTCAA TTTTCTTGAG AGGTTGGTGG TGTTTAAAAG GTAGTAGATA TTCTTGATGT ACTTTGTACT TATAGCTATT
ATAGGTTATG AGAAGTTGGG GACCAAACTA GTCTTATGTT TCTTTCAAGG ATCTATGATC TGTTATTGTA AAGAACATAG
CTTTACCAGA GCTGTTACTA ACATTTTTCA TGCTCTA

>Vigan.11G190300.01
ATGTCTAGGC TCATGGAACC ACTTTCTGTG GGAAGAGTGA TAGGAGAAGT GGTTGACATT TTCAGCCCAA GTGTGAGAAT
GAATGTGACA TATTCCACCA AGGAAGTTGC TAATGGTCAT GAGTTAATGC CTTCTACTGT TATGGCCAAA CCACGCGTGG
AGATTGGTGG TGATGACATG AGAACTGCTT ATACCTTGAT CATGACAGAC CCAGATGCTC CAAGTCCTAG TGATCCATGT
CTAAGGGAAC ATCTTCACTG GATGGTTACA GATATCCCTG GCACCACAGA TGTCTCTTTT GGAAAAGAGA TTATGGGGTA
TGAGAGTCCA AAACCAGTAA TAGGAATCCA CAGATATGTG TTCATCTTGT TCAAGCAGAG AGGAAGACAA ACAGTTAGAG
CTCCTTCTTC AAGAGACCAT TTCAACACAA GGAAATTCTC AGAAGAGAAT GGCCTTGGTC TACCAGTTGC TGCAGTTTAC
TTCAATGCTC AGAGAGAGAC TGCTGCAAGG AGAAGGTGA

>Vigan.11G190300.01
MSRLMEPLSV GRVIGEVVDI FSPSVRMNVT YSTKEVANGH ELMPSTVMAK PRVEIGGDDM RTAYTLIMTD PDAPSPSDPC
LREHLHWMVT DIPGTTDVSF GKEIMGYESP KPVIGIHRYV FILFKQRGRQ TVRAPSSRDH FNTRKFSEEN GLGLPVAAVY
FNAQRETAAR RR*