GBrowse Details

Vigan.11G042700.01

Basic Information:
Name: Vigan.11G042700.01
Multiple alignment
Variant Information
Position: Chr11:4802206..4803923 (+ strand)
Length: 1718
Functional Information:
Description: Similar to Uncharacterized protein. [I1LWK2, Glycine max]
GO: Molecular Function: DNA binding (GO:0003677)
Molecular Function: chromatin binding (GO:0003682)
InterPro: SANT/Myb domain (IPR001005)
Homeodomain-like (IPR009057)
Myb domain (IPR017930)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:7.12,6.22,11.43,1.92,0.02,2.63,0.44,1.63
Arabidopsis thaliana homolog: AT3G28910.1
Automatic updates:
Name: DQ822963 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max MYB transcription factor MYB53 (MYB53) mRNA, partial cds.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:4802206..4802584 (+ strand)
Length: 379
Type: five_prime_UTR
Position: Chr11:4802585..4802714 (+ strand)
Length: 130
Type: CDS
Position: Chr11:4802852..4802981 (+ strand)
Length: 130
Type: CDS
Position: Chr11:4803067..4803766 (+ strand)
Length: 700
Type: CDS
Position: Chr11:4803767..4803923 (+ strand)
Length: 157
Type: three_prime_UTR

>Vigan.11G042700.01 class=Sequence position=Chr11:4802206..4803923 (+ strand)
GTTAGAGACT TGAAAAAGTA GTAGAGAACC ATTGAATGCT CCCACGCGGT TTTGAGAGGC ACAAAGAGAG CCATTGCTCC
AAACCTCAGC TGACTTTGCC CTTCTTTCTT CCCTATAACA GTTAATGCTT TTGCTGTCAA CTTTTGACTA TTTGCCTTCA
CTTCTTTTTC TTTTTTTTCT CTCTCTCTCT TCAGTCAGCG ACCCTTCACA CACTCTTCTT CCCTTTCTTT TCACTATTTA
TACACCCTTC ATTTTGACTC TTGCCTTGGC TCATTGCAAT TGCAAACAAG AGGAAATCCA AGAAACACAA GAGATCTAGC
TATACTATAT CGTAAAAGTA TAGTGAAGTA AAAGAAAAAG ATACACTCAA CAAGGCAAGA TGGGAAGGCC ACCTTGTTGT
GATAAAGGTG TGAAGAAAGG ACCTTGGACT CCTGAAGAAG ATATCATTTT GGTGTCTTAC ATACAGGACC ATGGTCCTGG
CAATTGGAAA GCTGTTCCTA CCAATACTGG TTGGTGAATT TTCCACTTTC AGATCTTAAT TTGCTGGCTT TTTGGATGAT
TCTTCTGTCA TGGTTTTAAC AAGTCAGGGA AATTTTTTTG ATTCTGGTGA TCTGAATGGT ACTTTCTTTT TGTGTTTAAC
TTTCAGGGTT GTCAAGGTGC AGCAAGAGTT GTAGACTTAG ATGGACTAAT TATCTGAGGC CAGGAATCAA AAGGGGTAAC
TTCACTGAAC AAGAGGAGAA GATGATAATC CATCTTCAAG CACTTTTAGG GAACAGGTAA ATTCATCTTA CAGCTTCTGC
TTAGTTATTG AAATCTGTTA ATTACCATAT TGTAACCTAA ACCTCATTGA TTATGATGTA GATGGGCTGC CATAGCTGCA
TACCTGCCAC AAAGAACAGA TAATGACATA AAGAACTACT GGAACACCTA TCTGAAAAAG AAGCTGAACA AATTGGAAGC
AAGTGGTTCT GAAGGAAGCT TGGGGCATGG TGGGGTTTCA GTTTCTCAGC CAATGTCTAG AGGGCAGTGG GAAAGAAGGC
TACAAACGGA TATTCACATG GCCAAGAAAG CTCTCAGTGA AGCTCTTTCA CCAAAGAAGA CATCATCTAC TTTTTTAGCT
GAGTTAAATT CAAACCTTTC CAATGATAAT AGCACTGCCT CCTTCTACAA CTCTACAAAA CCAACACCAT CCATAAGTTA
TGCCTCTAGT GCTGACAACA TAGCTCGTTT GTTGAAGGGG TGGATGAAAA GCACACCAAA ACGTGCTGCC ACTCAAAACT
CCATTATCAA CTTGGCTTGT GCAGGAGCTG ACACTGCTTC CAGTGAAGGA ACAACAAAGG GAAGCTCAAC CAGTGTGGAG
TTGTCTGAGA CTTTTGAGAC CTTGTTTGGT TATGAGTCTT TGGAGTCTTC AAATTCTGAG TTTTCACCTT CTCTTTCTCC
TGAGGGCACT CTCTTCCAAG ATGAGAGCAA GCCTGATATT ACTGGAATAG ACGTGCCTTT CTCTTTGCTT GAGAAATGGC
TTCTGGATGA TTCTGGTTGT CAAGAGAAAC TTAGCTTCTA GATTTAGTTA TAGTTCAATT TGTTGCTTTT TCTTAGTTAT
AGCAGACTAA ACCTGAATCT CACTTTGGCC TTCAACCCCT TTTGGTCCTA GAAGTGTATA TTCCAATCCA ATATTAACAT
TATTATATTA TTATATCCTA TAGTTAGATG TCTTAATG

>Vigan.11G042700.01
GTTAGAGACT TGAAAAAGTA GTAGAGAACC ATTGAATGCT CCCACGCGGT TTTGAGAGGC ACAAAGAGAG CCATTGCTCC
AAACCTCAGC TGACTTTGCC CTTCTTTCTT CCCTATAACA GTTAATGCTT TTGCTGTCAA CTTTTGACTA TTTGCCTTCA
CTTCTTTTTC TTTTTTTTCT CTCTCTCTCT TCAGTCAGCG ACCCTTCACA CACTCTTCTT CCCTTTCTTT TCACTATTTA
TACACCCTTC ATTTTGACTC TTGCCTTGGC TCATTGCAAT TGCAAACAAG AGGAAATCCA AGAAACACAA GAGATCTAGC
TATACTATAT CGTAAAAGTA TAGTGAAGTA AAAGAAAAAG ATACACTCAA CAAGGCAAGA TGGGAAGGCC ACCTTGTTGT
GATAAAGGTG TGAAGAAAGG ACCTTGGACT CCTGAAGAAG ATATCATTTT GGTGTCTTAC ATACAGGACC ATGGTCCTGG
CAATTGGAAA GCTGTTCCTA CCAATACTGG GTTGTCAAGG TGCAGCAAGA GTTGTAGACT TAGATGGACT AATTATCTGA
GGCCAGGAAT CAAAAGGGGT AACTTCACTG AACAAGAGGA GAAGATGATA ATCCATCTTC AAGCACTTTT AGGGAACAGA
TGGGCTGCCA TAGCTGCATA CCTGCCACAA AGAACAGATA ATGACATAAA GAACTACTGG AACACCTATC TGAAAAAGAA
GCTGAACAAA TTGGAAGCAA GTGGTTCTGA AGGAAGCTTG GGGCATGGTG GGGTTTCAGT TTCTCAGCCA ATGTCTAGAG
GGCAGTGGGA AAGAAGGCTA CAAACGGATA TTCACATGGC CAAGAAAGCT CTCAGTGAAG CTCTTTCACC AAAGAAGACA
TCATCTACTT TTTTAGCTGA GTTAAATTCA AACCTTTCCA ATGATAATAG CACTGCCTCC TTCTACAACT CTACAAAACC
AACACCATCC ATAAGTTATG CCTCTAGTGC TGACAACATA GCTCGTTTGT TGAAGGGGTG GATGAAAAGC ACACCAAAAC
GTGCTGCCAC TCAAAACTCC ATTATCAACT TGGCTTGTGC AGGAGCTGAC ACTGCTTCCA GTGAAGGAAC AACAAAGGGA
AGCTCAACCA GTGTGGAGTT GTCTGAGACT TTTGAGACCT TGTTTGGTTA TGAGTCTTTG GAGTCTTCAA ATTCTGAGTT
TTCACCTTCT CTTTCTCCTG AGGGCACTCT CTTCCAAGAT GAGAGCAAGC CTGATATTAC TGGAATAGAC GTGCCTTTCT
CTTTGCTTGA GAAATGGCTT CTGGATGATT CTGGTTGTCA AGAGAAACTT AGCTTCTAGA TTTAGTTATA GTTCAATTTG
TTGCTTTTTC TTAGTTATAG CAGACTAAAC CTGAATCTCA CTTTGGCCTT CAACCCCTTT TGGTCCTAGA AGTGTATATT
CCAATCCAAT ATTAACATTA TTATATTATT ATATCCTATA GTTAGATGTC TTAATG

>Vigan.11G042700.01
ATGGGAAGGC CACCTTGTTG TGATAAAGGT GTGAAGAAAG GACCTTGGAC TCCTGAAGAA GATATCATTT TGGTGTCTTA
CATACAGGAC CATGGTCCTG GCAATTGGAA AGCTGTTCCT ACCAATACTG GGTTGTCAAG GTGCAGCAAG AGTTGTAGAC
TTAGATGGAC TAATTATCTG AGGCCAGGAA TCAAAAGGGG TAACTTCACT GAACAAGAGG AGAAGATGAT AATCCATCTT
CAAGCACTTT TAGGGAACAG ATGGGCTGCC ATAGCTGCAT ACCTGCCACA AAGAACAGAT AATGACATAA AGAACTACTG
GAACACCTAT CTGAAAAAGA AGCTGAACAA ATTGGAAGCA AGTGGTTCTG AAGGAAGCTT GGGGCATGGT GGGGTTTCAG
TTTCTCAGCC AATGTCTAGA GGGCAGTGGG AAAGAAGGCT ACAAACGGAT ATTCACATGG CCAAGAAAGC TCTCAGTGAA
GCTCTTTCAC CAAAGAAGAC ATCATCTACT TTTTTAGCTG AGTTAAATTC AAACCTTTCC AATGATAATA GCACTGCCTC
CTTCTACAAC TCTACAAAAC CAACACCATC CATAAGTTAT GCCTCTAGTG CTGACAACAT AGCTCGTTTG TTGAAGGGGT
GGATGAAAAG CACACCAAAA CGTGCTGCCA CTCAAAACTC CATTATCAAC TTGGCTTGTG CAGGAGCTGA CACTGCTTCC
AGTGAAGGAA CAACAAAGGG AAGCTCAACC AGTGTGGAGT TGTCTGAGAC TTTTGAGACC TTGTTTGGTT ATGAGTCTTT
GGAGTCTTCA AATTCTGAGT TTTCACCTTC TCTTTCTCCT GAGGGCACTC TCTTCCAAGA TGAGAGCAAG CCTGATATTA
CTGGAATAGA CGTGCCTTTC TCTTTGCTTG AGAAATGGCT TCTGGATGAT TCTGGTTGTC AAGAGAAACT TAGCTTCTAG

>Vigan.11G042700.01
MGRPPCCDKG VKKGPWTPEE DIILVSYIQD HGPGNWKAVP TNTGLSRCSK SCRLRWTNYL RPGIKRGNFT EQEEKMIIHL
QALLGNRWAA IAAYLPQRTD NDIKNYWNTY LKKKLNKLEA SGSEGSLGHG GVSVSQPMSR GQWERRLQTD IHMAKKALSE
ALSPKKTSST FLAELNSNLS NDNSTASFYN STKPTPSISY ASSADNIARL LKGWMKSTPK RAATQNSIIN LACAGADTAS
SEGTTKGSST SVELSETFET LFGYESLESS NSEFSPSLSP EGTLFQDESK PDITGIDVPF SLLEKWLLDD SGCQEKLSF*