GBrowse Details

Vigan.10G179800.01

Basic Information:
Name: Vigan.10G179800.01
Multiple alignment
Variant Information
Position: Chr10:23485323..23487040 (+ strand)
Length: 1718
Functional Information:
Description: Similar to Caffeoyl-CoA O-methyltransferase 2. [Q9SWB8, Eucalyptus globulus]
GO: Molecular Function: O-methyltransferase activity (GO:0008171)
InterPro: O-methyltransferase, family 3 (IPR002935)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,0.63,0.00,36.27,0.61,15.57,0.07
Structure :
Position: Chr10:23485323..23485452 (+ strand)
Length: 130
Type: five_prime_UTR
Position: Chr10:23485453..23485548 (+ strand)
Length: 96
Type: CDS
Position: Chr10:23485637..23485716 (+ strand)
Length: 80
Type: CDS
Position: Chr10:23485803..23485947 (+ strand)
Length: 145
Type: CDS
Position: Chr10:23486049..23486180 (+ strand)
Length: 132
Type: CDS
Position: Chr10:23486305..23486598 (+ strand)
Length: 294
Type: CDS
Position: Chr10:23486599..23487040 (+ strand)
Length: 442
Type: three_prime_UTR

>Vigan.10G179800.01 class=Sequence position=Chr10:23485323..23487040 (+ strand)
GAAGCTTCAA CTTACCAACC CCATAACAAC CCATTGACAT TTGCACTTAG CTTCTATATA TAACAGGTTT TGGCCATTGT
TTACCTTAAG CAAATATTCA GAGAATAAAT CCCATAGGCA GATATCAATC ATGACTATCA CCAACGAAGA CCAACAACAA
ATTCAAATAC CTGGCCACAA ACATCTCCGT CACAAGAGTC TCCTTCAGAG CGATGCACTC TATCAGGTTC ATTCCATTAC
TAACATTTTC TTCTTCTTTT TCCATAGTAA CAATACCAAC ATTTTCATTC CATCTACAAT TACTGGTTTT GCAGTATATA
CTTGAGACCA GTGTATACCC AAGAGAGCAC GAGAGCTTGA AGGAGCTACG CGAGTTGACG GAAAAACACC CTTGGTAAGA
TCACGATCGA TTATGTTGGT TTTCAAATCC AAAAGCTTAA TTGTGACAAC ATCATTAAAT ATACCTATGT TGTAAAACAG
GAACCTCTTA GCTACACCAC CTGACGAAGG ACAACTTCTA AGGATGTTAC TGAAGGTGAT CAATGCGAAG AACACCATGG
AGATTGGCGT CTACACCGGT TACTCCTTGC TTTCCACTGC CCTCGCTCTT CCGTCTGATG GAAAGGTGCT TAATTCATAC
ATATATACAT TAACATATCA ATATATATAT ATCATATATA AGGTGCATAT GAGTGATGAA ATTAAGGTTT TGTTGAAATG
AAACAGATCC TGGCAATGGA TATTAGCAGG GAATATTATG AACTGGGGTT GCCTGTGATT GAAAAGGCAG GAGTGGCTCA
CAAGATTGAC TTCAGAGAAG GTCCAGCACT TCCTCTTCTT GATCAACTCA TCAAAGACGT GAGTTCAATC AATCCATGCA
CATTATTTTC AAGAAAAAGA AAGAATCAGT GTCAAAATTA TGTGTATATA AGTCTATGGT GTTTGTTGAT GAATGTGTAT
TGCATTGCAT GAACATGAAC AGGAAAAGAA CAAGGGAAGC TTCGATTTCA TCTTCGTCGA TGCTGATAAG GATAACTACT
TGAACTATCA CAATAGGGTG ATTGAGCTTG TCAAGATTGG GGGAATGATC GCCTACGATA ACACCCTGTG GAACGGCTCT
GTGGCCGCCC CATCCGATGC TCCTCTCTTG GATTATATTA AGTATTATCG CGATTTTGTG ATAGAGCTGA ATCAAGCACT
TGCACTTGAT TCAAGGGTCG AGATTTGCCA GCTTCCCGTT GGTGACGGCA TTACACTGTG CCGCCGCATC ATCTGATCAC
TCTGCTCCTT TTACCCGCAA CATACGGAAA AACACGAGTT TCAACTATGT TACCTAATCC ATGAATAAAA TAATGTGTGC
CTGCTTGGAT GAATTTGAAT TTTTGTCTTG TAAGCGAATA CATTCATAAC GTGTCTCTTC CTCAACACAA TACACATGTA
TTCATTCCAA ATCATATTTA CGATATATTT ATATATAGTG TGTAGTGGAG TAATAATAAG TTCAATTATA TATAATATGG
TGGCATGGAT CTTCCTTCTG CAGTCCCTTT TTTTTTCTTT CTGCACCCCA TAAAAGTTGT AATACTCCTT ATTGGAATTT
TTACTCTGTT AGTATGGGGT GACAATTAGT AATAATAATA ATGAGGTCTA GGAATAAAAA AGCCCTTTCG TATAATCAAG
AGAGCCCTGA TAGTATTTGG TTTTGGGCTA TATTTGAG

>Vigan.10G179800.01
GAAGCTTCAA CTTACCAACC CCATAACAAC CCATTGACAT TTGCACTTAG CTTCTATATA TAACAGGTTT TGGCCATTGT
TTACCTTAAG CAAATATTCA GAGAATAAAT CCCATAGGCA GATATCAATC ATGACTATCA CCAACGAAGA CCAACAACAA
ATTCAAATAC CTGGCCACAA ACATCTCCGT CACAAGAGTC TCCTTCAGAG CGATGCACTC TATCAGTATA TACTTGAGAC
CAGTGTATAC CCAAGAGAGC ACGAGAGCTT GAAGGAGCTA CGCGAGTTGA CGGAAAAACA CCCTTGGAAC CTCTTAGCTA
CACCACCTGA CGAAGGACAA CTTCTAAGGA TGTTACTGAA GGTGATCAAT GCGAAGAACA CCATGGAGAT TGGCGTCTAC
ACCGGTTACT CCTTGCTTTC CACTGCCCTC GCTCTTCCGT CTGATGGAAA GATCCTGGCA ATGGATATTA GCAGGGAATA
TTATGAACTG GGGTTGCCTG TGATTGAAAA GGCAGGAGTG GCTCACAAGA TTGACTTCAG AGAAGGTCCA GCACTTCCTC
TTCTTGATCA ACTCATCAAA GACGAAAAGA ACAAGGGAAG CTTCGATTTC ATCTTCGTCG ATGCTGATAA GGATAACTAC
TTGAACTATC ACAATAGGGT GATTGAGCTT GTCAAGATTG GGGGAATGAT CGCCTACGAT AACACCCTGT GGAACGGCTC
TGTGGCCGCC CCATCCGATG CTCCTCTCTT GGATTATATT AAGTATTATC GCGATTTTGT GATAGAGCTG AATCAAGCAC
TTGCACTTGA TTCAAGGGTC GAGATTTGCC AGCTTCCCGT TGGTGACGGC ATTACACTGT GCCGCCGCAT CATCTGATCA
CTCTGCTCCT TTTACCCGCA ACATACGGAA AAACACGAGT TTCAACTATG TTACCTAATC CATGAATAAA ATAATGTGTG
CCTGCTTGGA TGAATTTGAA TTTTTGTCTT GTAAGCGAAT ACATTCATAA CGTGTCTCTT CCTCAACACA ATACACATGT
ATTCATTCCA AATCATATTT ACGATATATT TATATATAGT GTGTAGTGGA GTAATAATAA GTTCAATTAT ATATAATATG
GTGGCATGGA TCTTCCTTCT GCAGTCCCTT TTTTTTTCTT TCTGCACCCC ATAAAAGTTG TAATACTCCT TATTGGAATT
TTTACTCTGT TAGTATGGGG TGACAATTAG TAATAATAAT AATGAGGTCT AGGAATAAAA AAGCCCTTTC GTATAATCAA
GAGAGCCCTG ATAGTATTTG GTTTTGGGCT ATATTTGAG

>Vigan.10G179800.01
ATGACTATCA CCAACGAAGA CCAACAACAA ATTCAAATAC CTGGCCACAA ACATCTCCGT CACAAGAGTC TCCTTCAGAG
CGATGCACTC TATCAGTATA TACTTGAGAC CAGTGTATAC CCAAGAGAGC ACGAGAGCTT GAAGGAGCTA CGCGAGTTGA
CGGAAAAACA CCCTTGGAAC CTCTTAGCTA CACCACCTGA CGAAGGACAA CTTCTAAGGA TGTTACTGAA GGTGATCAAT
GCGAAGAACA CCATGGAGAT TGGCGTCTAC ACCGGTTACT CCTTGCTTTC CACTGCCCTC GCTCTTCCGT CTGATGGAAA
GATCCTGGCA ATGGATATTA GCAGGGAATA TTATGAACTG GGGTTGCCTG TGATTGAAAA GGCAGGAGTG GCTCACAAGA
TTGACTTCAG AGAAGGTCCA GCACTTCCTC TTCTTGATCA ACTCATCAAA GACGAAAAGA ACAAGGGAAG CTTCGATTTC
ATCTTCGTCG ATGCTGATAA GGATAACTAC TTGAACTATC ACAATAGGGT GATTGAGCTT GTCAAGATTG GGGGAATGAT
CGCCTACGAT AACACCCTGT GGAACGGCTC TGTGGCCGCC CCATCCGATG CTCCTCTCTT GGATTATATT AAGTATTATC
GCGATTTTGT GATAGAGCTG AATCAAGCAC TTGCACTTGA TTCAAGGGTC GAGATTTGCC AGCTTCCCGT TGGTGACGGC
ATTACACTGT GCCGCCGCAT CATCTGA

>Vigan.10G179800.01
MTITNEDQQQ IQIPGHKHLR HKSLLQSDAL YQYILETSVY PREHESLKEL RELTEKHPWN LLATPPDEGQ LLRMLLKVIN
AKNTMEIGVY TGYSLLSTAL ALPSDGKILA MDISREYYEL GLPVIEKAGV AHKIDFREGP ALPLLDQLIK DEKNKGSFDF
IFVDADKDNY LNYHNRVIEL VKIGGMIAYD NTLWNGSVAA PSDAPLLDYI KYYRDFVIEL NQALALDSRV EICQLPVGDG
ITLCRRII*