GBrowse Details

Vigan.10G178700.01

Basic Information:
Name: Vigan.10G178700.01
Multiple alignment
Variant Information
Position: Chr10:23388154..23391109 (+ strand)
Length: 2956
Functional Information:
Description: Similar to Remorin-like protein. [G7K6N7, Medicago truncatula]
InterPro: Remorin, C-terminal (IPR005516)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.11,0.26,3.06,6.91,1.08,2.73,0.77,5.44
Automatic updates:
Name: NM_001255302 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100794712 (LOC100794712), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:23388154..23388732 (+ strand)
Length: 579
Type: five_prime_UTR
Position: Chr10:23388733..23389351 (+ strand)
Length: 619
Type: CDS
Position: Chr10:23389809..23390133 (+ strand)
Length: 325
Type: CDS
Position: Chr10:23390368..23390449 (+ strand)
Length: 82
Type: CDS
Position: Chr10:23390698..23390904 (+ strand)
Length: 207
Type: CDS
Position: Chr10:23390905..23391109 (+ strand)
Length: 205
Type: three_prime_UTR

>Vigan.10G178700.01 class=Sequence position=Chr10:23388154..23391109 (+ strand)
CGTTGGTAAG ACCATACACA GCTTCTTATC TCAAGAGAAT GGCTTGGTTC AGTGTTATTG GACTTATGCG TTAAGTCTCA
ACCTATAATT GTCCACACAT ATGTGTTGTA CATATCCCTC TAATGTCGAT AGAACCAGAA AATGTTACTT AAACCATTCC
ATCATTGCCA CTCCACAAAC ATTGATGACA GCATCTCACG CTTAATTAGC GATTAAGTCA GTAATACCCT CACATTCAAG
GGTCTAATTT CGGCATTTGG TGTCAGAGTT TAACGCGCAA CACCACAAAT CGTCCCCTTC AAGCCTTTGT TGCTTTTTGT
GTGACCCGGA TTGAACCATA CCAACTGATT GAGTAATGAG TGGTCAAAAC CTACAGCAAG TTCTTTTTTT TTATACTGCC
AACATAAAGC TTTGTTTTCC TCTGGAAACT AGTGTTTTCT TTTTCTTCTT TGTTTCAGAA TCATCACCTC CGATATTTGT
TTCAGTATAA ACAAGATTTT CCATATTTGA AGTGACAGAG GGCTTGCTCA AGAGGCTTTG CCAACTGAAA GTACCTCCAA
AAGGGGTAGA TAAAGTGTCA TGAAGAAGAG TTCTGGTTCC TCTCAGAAAC TTGGTTCGTT TCTAAGTCCA GGGGCACCAC
ACTATAGAGA GAAAAACACT GCGGGCCAAA ACGGGTGGAG CTCGGAGAGG GTGTTGCAGC CATCGAGCAG CAGCATAAGG
CATCAAGCTA GTGTGGCTAA CTTGACACCC TTCAACAGTG GAAGAACAGT ACCCTCAAAA TGGGATGATG CAGAGAGGTG
GATTTGTAGC CCCGTTTCAG GCTATACTAA TCACAAAACT AATTCCTATG TACAACTTCA TCGGCGACCC AAATCAAAAA
GTGGTCCTAT TGTGCCTCCA GGAAAAGGCT ACTACTCCAA TTACTCACCC ACAATTCCAC TTCGCCAAGG TTTGGCAGTG
AAAAACTTCA TGATGGGTGG TTCCCCTTTT TCAACGGGAG TGTTGGCACC GGATGCTATT TCTCTTCACC ATTATTATGC
ACACGATGCC GTTTTTGGTC CCCGTTATGA CTTTGACAGT ACTATGCAAT GTTCTAGTCC TCTTCTCAAC GATAATAGCG
AAGCTCTACT CCCATCAGTG TCTAGTGCAC CGGTGTGGTC AGAACTTCTG TGTGACCCAT CTTCGCCTAA TTCTCAAGGT
ATGAATACTG GAGTTCCTCT TCAGAGGTAT TAGCCTTTCT AAACTCACAT TGCATGCTCC ATTTAAGATG ATGAATATGT
ATCAAATGGA TTTAGATTGG TGAAAACTGA TACGTTGATT GTAAGATATA GTTTATAGCC AAATGTATGT GATGTGACTG
ACTGGTTTCA ACTCCAAGTA TACTTCACTC AGAACACCTA TATTCATAAA TAAGAGATGC GTGTCAAGTA CAGAGTGGTT
GGTGAGACAT TCCTTGGTTC AATTTGGTAG TATAGTTAGT GTCTTGGTCT ATTTGTGGGA GATAACTCGA TCAAAGCGAG
GATAAGATTT TCTGTTTTGT GTGCAGTCAC CATAATGAAT ATTGGGTTGA TAGTCGAATA CGAAAAATTA TATGGCTGTG
TATTGACATG CGAGAATTCA CATATTTAAA ACGTTTCAGT TATTTTCCTT TACAGATGAG AAACGAAATG GAACTACGAA
TGAGGACGCA TTGACATGTC TCTCTCGATG TGATAAAGGA ACTCAAATGA GCCCTCCTGA AACTGAGAAT GATGCAGCAA
AATCCTCACC CACTTGGACC ATGAATCATC AAAATAGCCA TGCTGCGAAG TTAGAGGTGA GAGATGTAGA GGTAGACAGT
GAGGCTACTA TTATTAGGTG GTCTAAGAGC CATGTACCTA AGCTGAGCTT GCTACCTGGT AAACACTCAA GGAAAAGGAG
TAGTACGGAA GCCCAACCTT CAGGTTTGGA TATTGCAGAG TCAACGTTGG ACTCTACCAA GTATGTTCTT TAGATGCTCA
GCTGATTTTA GTCCTCATAT ATTTGAGTTC TTGGGTTACG AGTTATCCCA GACATAAAAT AAATTTGGAA TATTTACTGA
ATTAATCCAA AATTTCTACT GCCATTCATT CTTCTCATTG TCCAGTATCA TTATTATCAA GATATTTGAA CCTCTCCAAC
ATTCATTCAG CGATAAAAAC AGATTTGATG TCATTGTTTT TGTTCTTGGA GCAGGTTTCA GAGGGAGGAA TCCAAAATCA
TTGCATGGGA GAGTTTGCAA AAGGCCAAGG CTGAAGCTGC AGTACGAAAA CTAGAGGTTT TTTATTCATC CCAGCTTGTG
TATATATTGA ACTTTCTCAT ATCATGTGTG TCCCTATGCC AAGTCAAATT CGTAAGCAAA ATACATTCAA CAAGGCTCCA
TCGCTAAACC GTAAAATCAT TGTCGTGTCG TGTCATGCTG CATGATAAAA CTAAAAACAT TATATACAGA GTGTATGTAT
ACAATGACTA CATCAGGGAC ATCTCGAGTT TTTCTTTCCC TAATGATGGA AGTATTTTAC ACAGATGAAA TTGGAAAAGA
AGAAATCGAC ATCGATGGAA AAGATTCTAA ACAAGCTGAG AAGGGCGCAG ATGAAGGCTG AAAAGATGAG AAACCAAATA
ACTGTAGAAG AGGATCAGCA GCAGGTTTCC AAGACTCGGA AAGTATTTTC ATTCCAAAAA TATGTCCAGA TATGGTCTCC
AAGGAGCTGC TTCGGCACTC ATGCTTCATG ATTAATATTT AGTCCAATAT ACAAATTATT AAGGTTTTGC CCCGATAACC
ACAGAAAAAT AATATTCAAG TCATAGGCCA TTTTCATTTG CCTTTTCTTT TTTTTGTACT TCCCAACAAC GTCAAATAGT
GAATTACTAC TGCATTCTTA CTGCCTTTTG ACATTTTAGG CATTATGTAC CAAACCAAAT CAGGTTTATT TCTGGA

>Vigan.10G178700.01
CGTTGGTAAG ACCATACACA GCTTCTTATC TCAAGAGAAT GGCTTGGTTC AGTGTTATTG GACTTATGCG TTAAGTCTCA
ACCTATAATT GTCCACACAT ATGTGTTGTA CATATCCCTC TAATGTCGAT AGAACCAGAA AATGTTACTT AAACCATTCC
ATCATTGCCA CTCCACAAAC ATTGATGACA GCATCTCACG CTTAATTAGC GATTAAGTCA GTAATACCCT CACATTCAAG
GGTCTAATTT CGGCATTTGG TGTCAGAGTT TAACGCGCAA CACCACAAAT CGTCCCCTTC AAGCCTTTGT TGCTTTTTGT
GTGACCCGGA TTGAACCATA CCAACTGATT GAGTAATGAG TGGTCAAAAC CTACAGCAAG TTCTTTTTTT TTATACTGCC
AACATAAAGC TTTGTTTTCC TCTGGAAACT AGTGTTTTCT TTTTCTTCTT TGTTTCAGAA TCATCACCTC CGATATTTGT
TTCAGTATAA ACAAGATTTT CCATATTTGA AGTGACAGAG GGCTTGCTCA AGAGGCTTTG CCAACTGAAA GTACCTCCAA
AAGGGGTAGA TAAAGTGTCA TGAAGAAGAG TTCTGGTTCC TCTCAGAAAC TTGGTTCGTT TCTAAGTCCA GGGGCACCAC
ACTATAGAGA GAAAAACACT GCGGGCCAAA ACGGGTGGAG CTCGGAGAGG GTGTTGCAGC CATCGAGCAG CAGCATAAGG
CATCAAGCTA GTGTGGCTAA CTTGACACCC TTCAACAGTG GAAGAACAGT ACCCTCAAAA TGGGATGATG CAGAGAGGTG
GATTTGTAGC CCCGTTTCAG GCTATACTAA TCACAAAACT AATTCCTATG TACAACTTCA TCGGCGACCC AAATCAAAAA
GTGGTCCTAT TGTGCCTCCA GGAAAAGGCT ACTACTCCAA TTACTCACCC ACAATTCCAC TTCGCCAAGG TTTGGCAGTG
AAAAACTTCA TGATGGGTGG TTCCCCTTTT TCAACGGGAG TGTTGGCACC GGATGCTATT TCTCTTCACC ATTATTATGC
ACACGATGCC GTTTTTGGTC CCCGTTATGA CTTTGACAGT ACTATGCAAT GTTCTAGTCC TCTTCTCAAC GATAATAGCG
AAGCTCTACT CCCATCAGTG TCTAGTGCAC CGGTGTGGTC AGAACTTCTG TGTGACCCAT CTTCGCCTAA TTCTCAAGAT
GAGAAACGAA ATGGAACTAC GAATGAGGAC GCATTGACAT GTCTCTCTCG ATGTGATAAA GGAACTCAAA TGAGCCCTCC
TGAAACTGAG AATGATGCAG CAAAATCCTC ACCCACTTGG ACCATGAATC ATCAAAATAG CCATGCTGCG AAGTTAGAGG
TGAGAGATGT AGAGGTAGAC AGTGAGGCTA CTATTATTAG GTGGTCTAAG AGCCATGTAC CTAAGCTGAG CTTGCTACCT
GGTAAACACT CAAGGAAAAG GAGTAGTACG GAAGCCCAAC CTTCAGGTTT GGATATTGCA GAGTCAACGT TGGACTCTAC
CAAGTTTCAG AGGGAGGAAT CCAAAATCAT TGCATGGGAG AGTTTGCAAA AGGCCAAGGC TGAAGCTGCA GTACGAAAAC
TAGAGATGAA ATTGGAAAAG AAGAAATCGA CATCGATGGA AAAGATTCTA AACAAGCTGA GAAGGGCGCA GATGAAGGCT
GAAAAGATGA GAAACCAAAT AACTGTAGAA GAGGATCAGC AGCAGGTTTC CAAGACTCGG AAAGTATTTT CATTCCAAAA
ATATGTCCAG ATATGGTCTC CAAGGAGCTG CTTCGGCACT CATGCTTCAT GATTAATATT TAGTCCAATA TACAAATTAT
TAAGGTTTTG CCCCGATAAC CACAGAAAAA TAATATTCAA GTCATAGGCC ATTTTCATTT GCCTTTTCTT TTTTTTGTAC
TTCCCAACAA CGTCAAATAG TGAATTACTA CTGCATTCTT ACTGCCTTTT GACATTTTAG GCATTATGTA CCAAACCAAA
TCAGGTTTAT TTCTGGA

>Vigan.10G178700.01
ATGAAGAAGA GTTCTGGTTC CTCTCAGAAA CTTGGTTCGT TTCTAAGTCC AGGGGCACCA CACTATAGAG AGAAAAACAC
TGCGGGCCAA AACGGGTGGA GCTCGGAGAG GGTGTTGCAG CCATCGAGCA GCAGCATAAG GCATCAAGCT AGTGTGGCTA
ACTTGACACC CTTCAACAGT GGAAGAACAG TACCCTCAAA ATGGGATGAT GCAGAGAGGT GGATTTGTAG CCCCGTTTCA
GGCTATACTA ATCACAAAAC TAATTCCTAT GTACAACTTC ATCGGCGACC CAAATCAAAA AGTGGTCCTA TTGTGCCTCC
AGGAAAAGGC TACTACTCCA ATTACTCACC CACAATTCCA CTTCGCCAAG GTTTGGCAGT GAAAAACTTC ATGATGGGTG
GTTCCCCTTT TTCAACGGGA GTGTTGGCAC CGGATGCTAT TTCTCTTCAC CATTATTATG CACACGATGC CGTTTTTGGT
CCCCGTTATG ACTTTGACAG TACTATGCAA TGTTCTAGTC CTCTTCTCAA CGATAATAGC GAAGCTCTAC TCCCATCAGT
GTCTAGTGCA CCGGTGTGGT CAGAACTTCT GTGTGACCCA TCTTCGCCTA ATTCTCAAGA TGAGAAACGA AATGGAACTA
CGAATGAGGA CGCATTGACA TGTCTCTCTC GATGTGATAA AGGAACTCAA ATGAGCCCTC CTGAAACTGA GAATGATGCA
GCAAAATCCT CACCCACTTG GACCATGAAT CATCAAAATA GCCATGCTGC GAAGTTAGAG GTGAGAGATG TAGAGGTAGA
CAGTGAGGCT ACTATTATTA GGTGGTCTAA GAGCCATGTA CCTAAGCTGA GCTTGCTACC TGGTAAACAC TCAAGGAAAA
GGAGTAGTAC GGAAGCCCAA CCTTCAGGTT TGGATATTGC AGAGTCAACG TTGGACTCTA CCAAGTTTCA GAGGGAGGAA
TCCAAAATCA TTGCATGGGA GAGTTTGCAA AAGGCCAAGG CTGAAGCTGC AGTACGAAAA CTAGAGATGA AATTGGAAAA
GAAGAAATCG ACATCGATGG AAAAGATTCT AAACAAGCTG AGAAGGGCGC AGATGAAGGC TGAAAAGATG AGAAACCAAA
TAACTGTAGA AGAGGATCAG CAGCAGGTTT CCAAGACTCG GAAAGTATTT TCATTCCAAA AATATGTCCA GATATGGTCT
CCAAGGAGCT GCTTCGGCAC TCATGCTTCA TGA

>Vigan.10G178700.01
MKKSSGSSQK LGSFLSPGAP HYREKNTAGQ NGWSSERVLQ PSSSSIRHQA SVANLTPFNS GRTVPSKWDD AERWICSPVS
GYTNHKTNSY VQLHRRPKSK SGPIVPPGKG YYSNYSPTIP LRQGLAVKNF MMGGSPFSTG VLAPDAISLH HYYAHDAVFG
PRYDFDSTMQ CSSPLLNDNS EALLPSVSSA PVWSELLCDP SSPNSQDEKR NGTTNEDALT CLSRCDKGTQ MSPPETENDA
AKSSPTWTMN HQNSHAAKLE VRDVEVDSEA TIIRWSKSHV PKLSLLPGKH SRKRSSTEAQ PSGLDIAEST LDSTKFQREE
SKIIAWESLQ KAKAEAAVRK LEMKLEKKKS TSMEKILNKL RRAQMKAEKM RNQITVEEDQ QQVSKTRKVF SFQKYVQIWS
PRSCFGTHAS *